Wall clock time and date at job start Mon Mar 30 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.35972 * 116.99782 * 180.02562 * 10 9 7 12 12 C 1.38326 * 120.07098 * 359.72291 * 11 10 9 13 13 C 1.38693 * 120.61472 * 179.72732 * 12 11 10 14 14 C 1.37663 * 120.40741 * 0.57192 * 13 12 11 15 15 C 1.39889 * 119.71431 * 359.70412 * 14 13 12 16 16 C 1.46622 * 120.99976 * 180.02562 * 15 14 13 17 17 C 1.35701 * 118.18920 * 179.97438 * 16 15 14 18 18 C 1.41193 * 119.78837 * 0.02562 * 17 16 15 19 19 O 1.21773 * 119.16645 * 180.02562 * 18 17 16 20 20 O 1.34170 * 121.66385 * 359.97438 * 18 17 16 21 21 C 1.35075 * 121.48163 * 0.03935 * 20 18 17 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08000 * 119.68896 * 0.02562 * 12 11 10 26 26 H 1.08007 * 119.80031 * 180.27997 * 13 12 11 27 27 H 1.08006 * 120.14290 * 179.68334 * 14 13 12 28 28 H 1.08000 * 120.90816 * 359.96065 * 16 15 14 29 29 H 1.07991 * 120.10730 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.6601 -4.8418 0.0014 12 6 0.2890 -5.0247 0.0056 13 6 -0.2533 -6.3013 -0.0004 14 6 0.5670 -7.4068 0.0011 15 6 1.9559 -7.2396 0.0025 16 6 2.8558 -8.3972 0.0035 17 6 4.1935 -8.1692 0.0043 18 6 4.6791 -6.8434 0.0047 19 8 5.8817 -6.6519 0.0049 20 8 3.8490 -5.7893 0.0037 21 6 2.5076 -5.9478 0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 -0.3653 -4.1655 0.0089 26 1 -1.3258 -6.4289 -0.0015 27 1 0.1402 -8.3989 0.0016 28 1 2.4647 -9.4039 0.0039 29 1 4.8845 -8.9991 0.0047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382742709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:18 Heat of formation + Delta-G solvation = -89.935810 kcal Electronic energy + Delta-G solvation = -16811.893888 eV Core-core repulsion = 13858.355170 eV Total energy + Delta-G solvation = -2953.538718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.91746 -40.66955 -38.93240 -38.05305 -35.36338 -34.94703 -31.43544 -30.87223 -29.47623 -25.93081 -25.29352 -24.88834 -23.12614 -20.59179 -19.56593 -18.92402 -18.29201 -17.93929 -17.59824 -16.68422 -16.50273 -16.27049 -16.16942 -15.53646 -15.00606 -14.55001 -14.41338 -13.96353 -13.57101 -13.25304 -13.10727 -12.94275 -12.72585 -12.60318 -12.31030 -12.17018 -11.45207 -11.38002 -11.32663 -10.74991 -9.54548 -9.08033 -8.44864 -6.58185 -0.77601 0.02734 0.59001 1.35799 1.36397 1.40441 1.51282 1.81560 2.19491 2.49797 2.70577 2.89725 3.16774 3.42937 3.70937 3.90339 3.96208 4.26790 4.28270 4.61041 4.62331 4.70685 4.91228 4.95412 5.08728 5.21986 5.34110 5.43518 5.66471 5.76359 6.06087 6.31834 6.48815 6.72255 7.13525 8.67278 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.005936 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.988982 B = 4715.627256 C = 5676.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.018 3.982 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.056 0.944 9 C 0.210 3.790 10 O -0.339 6.339 11 C 0.087 3.913 12 C -0.173 4.173 13 C -0.089 4.089 14 C -0.077 4.077 15 C -0.130 4.130 16 C 0.043 3.957 17 C -0.260 4.260 18 C 0.488 3.512 19 O -0.527 6.527 20 O -0.296 6.296 21 C 0.067 3.933 22 H 0.276 0.724 23 H 0.012 0.988 24 H 0.011 0.989 25 H 0.132 0.868 26 H 0.175 0.825 27 H 0.200 0.800 28 H 0.223 0.777 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -19.882 0.002 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.600 4.600 8 H 0.074 0.926 9 C 0.137 3.863 10 O -0.254 6.254 11 C 0.041 3.959 12 C -0.192 4.192 13 C -0.107 4.107 14 C -0.094 4.094 15 C -0.131 4.131 16 C 0.026 3.974 17 C -0.279 4.279 18 C 0.341 3.659 19 O -0.420 6.420 20 O -0.208 6.208 21 C 0.023 3.977 22 H 0.085 0.915 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.150 0.850 26 H 0.193 0.807 27 H 0.217 0.783 28 H 0.239 0.761 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.159 -19.405 0.004 19.660 hybrid contribution 0.445 1.639 0.000 1.698 sum -2.714 -17.766 0.004 17.972 Atomic orbital electron populations 1.70014 1.07340 1.29097 1.49227 1.25844 0.96083 1.02945 0.93320 0.85135 0.78326 0.77209 0.78761 1.19653 1.19046 1.19058 1.21303 0.94078 0.90592 1.54054 0.92593 1.20296 0.88287 0.82098 0.95578 1.86182 1.38979 1.12643 1.87552 1.19027 0.92410 0.84400 1.00084 1.21596 0.91486 1.01432 1.04678 1.21443 1.02600 0.89629 0.96984 1.21607 0.88790 1.01640 0.97396 1.19409 0.96971 0.89696 1.07038 1.23421 0.90518 0.99610 0.83883 1.22733 0.99138 0.94373 1.11615 1.20298 0.85292 0.85646 0.74663 1.90896 1.14175 1.86785 1.50174 1.83535 1.17459 1.42315 1.77473 1.18873 0.78415 0.93677 1.06741 0.91499 0.97074 0.97081 0.85034 0.80716 0.78307 0.76065 0.78905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 13.29 21.45 0.28 -53.05 15 2 C 0.02 1.05 5.46 84.65 0.46 1.51 15 3 Si 0.98 44.64 29.54 68.60 2.03 46.67 15 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 5 H -0.27 -11.39 7.11 99.48 0.71 -10.69 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.56 -34.18 9.43 25.60 0.24 -33.94 15 8 H 0.06 3.48 7.81 -2.91 -0.02 3.46 15 9 C 0.21 11.81 4.49 71.24 0.32 12.13 15 10 O -0.34 -18.23 9.93 -79.93 -0.79 -19.02 15 11 C 0.09 3.70 6.70 22.56 0.15 3.85 15 12 C -0.17 -5.84 9.03 22.40 0.20 -5.63 15 13 C -0.09 -1.86 10.02 22.24 0.22 -1.63 15 14 C -0.08 -1.21 9.83 22.53 0.22 -0.99 15 15 C -0.13 -3.00 5.87 -20.15 -0.12 -3.11 15 16 C 0.04 0.62 10.13 23.87 0.24 0.86 15 17 C -0.26 -5.54 9.94 22.41 0.22 -5.32 15 18 C 0.49 17.66 7.89 68.55 0.54 18.20 15 19 O -0.53 -22.77 17.91 19.04 0.34 -22.43 15 20 O -0.30 -12.67 9.62 19.60 0.19 -12.48 15 21 C 0.07 2.47 6.77 23.08 0.16 2.63 15 22 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 23 H 0.01 0.65 7.67 -2.39 -0.02 0.63 15 24 H 0.01 0.65 7.65 -2.39 -0.02 0.63 15 25 H 0.13 4.81 6.26 -2.91 -0.02 4.80 15 26 H 0.18 2.24 8.06 -2.91 -0.02 2.21 15 27 H 0.20 0.76 8.06 -2.91 -0.02 0.74 15 28 H 0.22 0.21 8.06 -2.91 -0.02 0.19 15 29 H 0.19 2.77 8.06 -2.92 -0.02 2.74 15 Total: -1.00 -81.62 267.10 6.09 -75.53 By element: Atomic # 1 Polarization: -4.94 SS G_CDS: 1.18 Total: -3.76 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 2.86 Total: -11.46 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.28 Total: -53.05 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -0.26 Total: -53.93 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -81.62 6.09 -75.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382742709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.406 kcal (2) G-P(sol) polarization free energy of solvation -81.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds