Wall clock time and date at job start Mon Mar 30 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48492 * 109.47293 * 270.00017 * 3 2 1 5 5 H 1.48504 * 109.47224 * 30.00391 * 3 2 1 6 6 H 1.48500 * 109.46821 * 149.99919 * 3 2 1 7 7 C 1.37873 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00236 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.35953 * 117.00050 * 179.97438 * 10 9 7 12 12 C 1.39234 * 119.88438 * 0.02867 * 11 10 9 13 13 C 1.37822 * 120.62040 * 180.02562 * 12 11 10 14 14 C 1.38912 * 120.04602 * 359.97438 * 13 12 11 15 15 O 1.35089 * 120.65554 * 180.02562 * 14 13 12 16 16 C 1.34171 * 121.49232 * 179.97438 * 15 14 13 17 17 O 1.21776 * 119.15476 * 180.02562 * 16 15 14 18 18 C 1.41169 * 121.68582 * 359.97438 * 16 15 14 19 19 C 1.35704 * 119.79367 * 0.02562 * 18 16 15 20 20 C 1.40574 * 119.52114 * 359.70159 * 14 13 12 21 21 C 1.38098 * 119.88680 * 180.02562 * 11 10 9 22 22 H 0.96998 * 120.00519 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47250 * 59.99993 * 9 7 2 24 24 H 1.09001 * 109.47258 * 299.99458 * 9 7 2 25 25 H 1.08002 * 119.68995 * 359.97438 * 12 11 10 26 26 H 1.08002 * 119.98110 * 179.97438 * 13 12 11 27 27 H 1.08002 * 120.10543 * 180.02562 * 18 16 15 28 28 H 1.08000 * 120.91118 * 180.02562 * 19 18 16 29 29 H 1.08002 * 120.21004 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6602 -4.8416 0.0011 12 6 0.2795 -5.0213 0.0010 13 6 -0.2635 -6.2880 0.0021 14 6 0.5676 -7.4010 0.0027 15 8 0.0486 -8.6482 0.0032 16 6 0.8355 -9.7349 0.0034 17 8 0.3222 -10.8392 0.0034 18 6 2.2434 -9.6309 0.0024 19 6 2.8290 -8.4067 0.0018 20 6 1.9621 -7.2242 -0.0041 21 6 2.5036 -5.9350 0.0016 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 -0.3721 -4.1599 0.0009 26 1 -1.3360 -6.4154 0.0024 27 1 2.8525 -10.5227 0.0021 28 1 3.9043 -8.3061 0.0007 29 1 3.5746 -5.7953 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382743808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:50 Heat of formation + Delta-G solvation = -72.701625 kcal Electronic energy + Delta-G solvation = -16449.169395 eV Core-core repulsion = 13496.378007 eV Total energy + Delta-G solvation = -2952.791388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.73794 -39.40525 -37.82509 -36.26328 -34.38351 -33.03950 -30.66070 -29.25889 -27.61218 -24.70061 -24.00064 -22.92561 -22.42703 -19.21267 -18.27813 -17.42656 -16.81423 -16.65671 -16.09254 -15.40659 -15.01583 -14.85893 -14.61235 -14.09927 -13.88656 -13.17937 -13.01115 -12.77932 -12.48902 -12.02871 -11.99443 -11.18824 -11.10476 -11.00110 -10.74273 -10.35533 -10.23714 -10.02441 -9.44556 -8.76646 -8.61912 -7.65600 -6.37082 -4.41622 0.18387 1.27428 1.59846 2.51807 2.88951 3.16735 3.22583 3.26434 3.81749 3.85998 4.15215 4.26836 4.36593 4.55235 4.95929 5.00705 5.18111 5.22616 5.40424 5.53623 5.73782 5.92310 6.04489 6.11587 6.33008 6.63410 6.70192 6.95245 7.21671 7.50579 7.54437 7.79275 8.21476 8.68979 9.24399 10.74002 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.067395 B = 0.004211 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.363984 B = 6647.201264 C = 7047.420239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.072 0.928 9 C 0.190 3.810 10 O -0.311 6.311 11 C 0.137 3.863 12 C -0.149 4.149 13 C -0.092 4.092 14 C 0.086 3.914 15 O -0.269 6.269 16 C 0.507 3.493 17 O -0.481 6.481 18 C -0.256 4.256 19 C 0.010 3.990 20 C -0.124 4.124 21 C -0.113 4.113 22 H 0.269 0.731 23 H 0.024 0.976 24 H 0.025 0.975 25 H 0.152 0.848 26 H 0.142 0.858 27 H 0.160 0.840 28 H 0.152 0.848 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -11.842 0.006 12.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.565 4.565 8 H 0.090 0.910 9 C 0.117 3.883 10 O -0.223 6.223 11 C 0.089 3.911 12 C -0.168 4.168 13 C -0.110 4.110 14 C 0.042 3.958 15 O -0.181 6.181 16 C 0.357 3.643 17 O -0.371 6.371 18 C -0.275 4.275 19 C -0.009 4.009 20 C -0.125 4.125 21 C -0.132 4.132 22 H 0.078 0.922 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.170 0.830 26 H 0.160 0.840 27 H 0.178 0.822 28 H 0.170 0.830 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.457 -12.167 0.011 12.649 hybrid contribution 0.245 0.952 -0.011 0.983 sum 3.703 -11.215 0.000 11.811 Atomic orbital electron populations 1.69930 1.06146 1.27857 1.49168 1.24939 0.95077 0.99634 0.94494 0.86221 0.79612 0.81595 0.78455 1.20225 1.20842 1.19455 1.20933 0.94320 0.88546 1.52724 0.91019 1.20759 0.88702 0.81722 0.97091 1.86187 1.38980 1.11334 1.85818 1.19157 0.91279 0.87141 0.93521 1.21622 0.95120 0.97751 1.02278 1.20313 1.00089 0.88897 1.01738 1.18884 0.91136 0.81816 1.03968 1.83494 1.43171 1.13655 1.77760 1.19212 0.87357 0.82411 0.75365 1.90948 1.77328 1.21027 1.47783 1.22552 0.94152 0.99972 1.10863 1.22870 1.00466 0.90491 0.87057 1.18780 0.91613 0.94092 1.08013 1.20298 1.00232 0.88247 1.04433 0.92166 0.95786 0.95764 0.83029 0.84010 0.82231 0.82997 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.83 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 15 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 6 H -0.27 -5.89 7.11 56.52 0.40 -5.48 15 7 C -0.53 -14.11 9.43 -34.45 -0.32 -14.43 15 8 H 0.07 1.90 7.81 -52.48 -0.41 1.49 15 9 C 0.19 4.59 4.49 36.00 0.16 4.75 15 10 O -0.31 -6.67 10.11 -19.59 -0.20 -6.87 15 11 C 0.14 2.41 6.68 -39.26 -0.26 2.15 15 12 C -0.15 -2.41 9.01 -39.36 -0.35 -2.77 15 13 C -0.09 -1.32 9.99 -39.48 -0.39 -1.71 15 14 C 0.09 1.25 6.76 -38.45 -0.26 0.99 15 15 O -0.27 -4.13 9.82 -20.85 -0.20 -4.34 15 16 C 0.51 7.48 7.89 31.84 0.25 7.73 15 17 O -0.48 -8.39 17.91 -19.58 -0.35 -8.74 15 18 C -0.26 -2.81 9.94 -39.38 -0.39 -3.20 15 19 C 0.01 0.10 10.13 -37.11 -0.38 -0.28 15 20 C -0.12 -1.64 5.87 -105.04 -0.62 -2.26 15 21 C -0.11 -1.62 9.76 -39.04 -0.38 -2.01 15 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 23 H 0.02 0.60 7.65 -51.93 -0.40 0.20 15 24 H 0.02 0.61 7.65 -51.93 -0.40 0.21 15 25 H 0.15 2.52 6.26 -52.49 -0.33 2.20 15 26 H 0.14 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.16 1.34 8.06 -52.49 -0.42 0.92 15 28 H 0.15 0.97 8.06 -52.49 -0.42 0.55 15 29 H 0.14 1.74 8.06 -52.49 -0.42 1.32 15 LS Contribution 267.31 15.07 4.03 4.03 Total: -1.00 -29.70 267.31 -6.41 -36.12 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: -2.36 Total: -2.12 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.05 Total: -9.50 kcal Atomic # 7 Polarization: -24.57 SS G_CDS: 0.74 Total: -23.83 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.75 Total: -19.95 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.70 -6.41 -36.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382743808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.583 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds