Wall clock time and date at job start Mon Mar 30 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99672 * 2 1 4 4 H 1.48492 * 109.47293 * 270.00017 * 3 2 1 5 5 H 1.48504 * 109.47224 * 30.00391 * 3 2 1 6 6 H 1.48500 * 109.46821 * 149.99919 * 3 2 1 7 7 C 1.37873 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99645 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00236 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47105 * 179.97438 * 9 7 2 11 11 C 1.35953 * 117.00050 * 179.97438 * 10 9 7 12 12 C 1.39234 * 119.88438 * 0.02867 * 11 10 9 13 13 C 1.37822 * 120.62040 * 180.02562 * 12 11 10 14 14 C 1.38912 * 120.04602 * 359.97438 * 13 12 11 15 15 O 1.35089 * 120.65554 * 180.02562 * 14 13 12 16 16 C 1.34171 * 121.49232 * 179.97438 * 15 14 13 17 17 O 1.21776 * 119.15476 * 180.02562 * 16 15 14 18 18 C 1.41169 * 121.68582 * 359.97438 * 16 15 14 19 19 C 1.35704 * 119.79367 * 0.02562 * 18 16 15 20 20 C 1.40574 * 119.52114 * 359.70159 * 14 13 12 21 21 C 1.38098 * 119.88680 * 180.02562 * 11 10 9 22 22 H 0.96998 * 120.00519 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47250 * 59.99993 * 9 7 2 24 24 H 1.09001 * 109.47258 * 299.99458 * 9 7 2 25 25 H 1.08002 * 119.68995 * 359.97438 * 12 11 10 26 26 H 1.08002 * 119.98110 * 179.97438 * 13 12 11 27 27 H 1.08002 * 120.10543 * 180.02562 * 18 16 15 28 28 H 1.08000 * 120.91118 * 180.02562 * 19 18 16 29 29 H 1.08002 * 120.21004 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5852 0.0005 11 6 1.6602 -4.8416 0.0011 12 6 0.2795 -5.0213 0.0010 13 6 -0.2635 -6.2880 0.0021 14 6 0.5676 -7.4010 0.0027 15 8 0.0486 -8.6482 0.0032 16 6 0.8355 -9.7349 0.0034 17 8 0.3222 -10.8392 0.0034 18 6 2.2434 -9.6309 0.0024 19 6 2.8290 -8.4067 0.0018 20 6 1.9621 -7.2242 -0.0041 21 6 2.5036 -5.9350 0.0016 22 1 -0.4851 0.8400 0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6242 -2.5567 0.8903 25 1 -0.3721 -4.1599 0.0009 26 1 -1.3360 -6.4154 0.0024 27 1 2.8525 -10.5227 0.0021 28 1 3.9043 -8.3061 0.0007 29 1 3.5746 -5.7953 0.0021 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382743808.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:49 Heat of formation + Delta-G solvation = -89.557505 kcal Electronic energy + Delta-G solvation = -16449.900321 eV Core-core repulsion = 13496.378007 eV Total energy + Delta-G solvation = -2953.522314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.89050 -40.76844 -39.14028 -37.56833 -35.45177 -34.99870 -31.88268 -30.58572 -29.38840 -25.97377 -25.26062 -24.35994 -23.78600 -20.45704 -19.57395 -18.83402 -18.39967 -17.84354 -17.45057 -16.80016 -16.50156 -16.48508 -15.99740 -15.22250 -14.97746 -14.46239 -14.45437 -14.10963 -13.75260 -13.43372 -13.40424 -12.96004 -12.81336 -12.45353 -12.13575 -12.05745 -11.46477 -11.36547 -11.28749 -10.69608 -9.74686 -9.00735 -8.38441 -6.51675 -0.83728 0.04607 0.49933 1.36454 1.42438 1.43807 1.55736 1.78718 2.25202 2.60624 2.65043 2.97482 3.11391 3.42168 3.48818 3.79106 4.06058 4.12605 4.38212 4.55957 4.66902 4.71937 4.91174 4.92896 4.99021 5.08548 5.20553 5.37090 5.53108 5.83434 6.08526 6.37361 6.48814 6.74139 7.20070 8.73253 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.067395 B = 0.004211 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.363984 B = 6647.201264 C = 7047.420239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.984 3.016 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.207 3.793 10 O -0.327 6.327 11 C 0.100 3.900 12 C -0.159 4.159 13 C -0.090 4.090 14 C 0.079 3.921 15 O -0.284 6.284 16 C 0.498 3.502 17 O -0.517 6.517 18 C -0.252 4.252 19 C 0.032 3.968 20 C -0.121 4.121 21 C -0.094 4.094 22 H 0.273 0.727 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.136 0.864 26 H 0.158 0.842 27 H 0.192 0.808 28 H 0.203 0.797 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 -12.556 -0.002 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.133 3.867 10 O -0.241 6.241 11 C 0.053 3.947 12 C -0.178 4.178 13 C -0.108 4.108 14 C 0.036 3.964 15 O -0.197 6.197 16 C 0.350 3.650 17 O -0.410 6.410 18 C -0.270 4.270 19 C 0.014 3.986 20 C -0.122 4.122 21 C -0.112 4.112 22 H 0.082 0.918 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.154 0.846 26 H 0.176 0.824 27 H 0.209 0.791 28 H 0.220 0.780 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.663 -12.903 0.002 14.091 hybrid contribution -0.491 0.995 -0.009 1.110 sum 5.172 -11.908 -0.007 12.983 Atomic orbital electron populations 1.70034 1.07650 1.28999 1.49633 1.25898 0.95963 1.03251 0.93648 0.85160 0.78427 0.76918 0.78833 1.19357 1.20151 1.18675 1.21314 0.94515 0.90086 1.53340 0.91254 1.20281 0.88484 0.82435 0.95461 1.86096 1.38347 1.12304 1.87305 1.19517 0.92396 0.86404 0.96385 1.21492 0.94775 0.98068 1.03419 1.20410 1.01135 0.88231 1.01041 1.19069 0.92096 0.81511 1.03768 1.83443 1.44361 1.14070 1.77788 1.19916 0.88849 0.81632 0.74561 1.90931 1.78174 1.22182 1.49688 1.22715 0.91860 1.01727 1.10718 1.23251 1.02254 0.88211 0.84891 1.19078 0.91500 0.95021 1.06627 1.20563 1.01239 0.87347 1.02095 0.91800 0.97441 0.97415 0.84586 0.82391 0.79074 0.78021 0.81043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.83 13.29 21.45 0.28 -51.55 15 2 C 0.01 0.65 5.46 84.65 0.46 1.11 15 3 Si 0.98 41.38 29.54 68.60 2.03 43.41 15 4 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 15 6 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 7 C -0.56 -30.33 9.43 25.60 0.24 -30.09 15 8 H 0.07 3.71 7.81 -2.91 -0.02 3.69 15 9 C 0.21 10.45 4.49 71.23 0.32 10.76 15 10 O -0.33 -14.36 10.11 -93.02 -0.94 -15.30 15 11 C 0.10 3.50 6.68 22.48 0.15 3.65 15 12 C -0.16 -5.32 9.01 22.41 0.20 -5.12 15 13 C -0.09 -2.58 9.99 22.33 0.22 -2.36 15 14 C 0.08 2.21 6.76 23.00 0.16 2.37 15 15 O -0.28 -8.47 9.82 14.50 0.14 -8.33 15 16 C 0.50 13.87 7.89 68.54 0.54 14.41 15 17 O -0.52 -17.65 17.91 19.03 0.34 -17.31 15 18 C -0.25 -4.54 9.94 22.40 0.22 -4.31 15 19 C 0.03 0.48 10.13 23.87 0.24 0.73 15 20 C -0.12 -2.87 5.87 -20.13 -0.12 -2.99 15 21 C -0.09 -2.48 9.76 22.62 0.22 -2.26 15 22 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 23 H 0.01 0.41 7.65 -2.39 -0.02 0.39 15 24 H 0.01 0.42 7.65 -2.39 -0.02 0.40 15 25 H 0.14 4.91 6.26 -2.91 -0.02 4.89 15 26 H 0.16 3.86 8.06 -2.91 -0.02 3.84 15 27 H 0.19 2.28 8.06 -2.91 -0.02 2.25 15 28 H 0.20 1.14 8.06 -2.91 -0.02 1.12 15 29 H 0.17 3.50 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -66.16 267.31 5.89 -60.27 By element: Atomic # 1 Polarization: 1.73 SS G_CDS: 1.18 Total: 2.91 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 2.86 Total: -14.09 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.28 Total: -51.55 kcal Atomic # 8 Polarization: -40.48 SS G_CDS: -0.46 Total: -40.94 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -66.16 5.89 -60.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382743808.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.292 kcal (2) G-P(sol) polarization free energy of solvation -66.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds