Wall clock time and date at job start Mon Mar 30 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47499 * 176.11656 * 3 2 1 5 5 C 1.50696 * 109.47370 * 179.97438 * 4 3 2 6 6 C 1.36517 * 119.85297 * 269.72860 * 5 4 3 7 7 C 1.41264 * 119.69076 * 179.73857 * 6 5 4 8 8 C 1.40345 * 120.29033 * 180.29245 * 7 6 5 9 9 H 1.07999 * 119.99898 * 205.40353 * 8 7 6 10 10 C 1.46543 * 119.99939 * 25.40567 * 8 7 6 11 11 N 1.29503 * 120.00383 * 12.15149 * 10 8 7 12 12 Si 1.86802 * 119.99984 * 192.14992 * 10 8 7 13 13 H 1.48497 * 109.46889 * 89.99764 * 12 10 8 14 14 H 1.48494 * 109.47266 * 209.99721 * 12 10 8 15 15 H 1.48497 * 109.46961 * 329.99996 * 12 10 8 16 16 C 1.41291 * 119.41959 * 0.50713 * 7 6 5 17 17 C 1.36492 * 119.69179 * 359.76422 * 16 7 6 18 18 N 1.48003 * 119.85107 * 180.02562 * 17 16 7 19 19 O 1.31704 * 120.00005 * 179.97438 * 18 17 16 20 20 O 1.31699 * 120.00519 * 359.97274 * 18 17 16 21 21 C 1.38773 * 119.84633 * 89.99991 * 5 4 3 22 22 H 1.09000 * 109.47197 * 296.11916 * 3 2 1 23 23 H 1.08999 * 109.47412 * 56.11567 * 3 2 1 24 24 H 1.09000 * 109.47109 * 300.00314 * 4 3 2 25 25 H 1.09003 * 109.46647 * 60.00029 * 4 3 2 26 26 H 1.07996 * 120.15597 * 359.97438 * 6 5 4 27 27 H 0.96997 * 120.00583 * 180.02562 * 11 10 8 28 28 H 1.07998 * 120.15803 * 179.77995 * 16 7 6 29 29 H 1.07996 * 119.70194 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.4401 -0.0977 5 6 4.6244 1.4407 -0.0971 6 6 5.3034 1.5270 1.0841 7 6 6.7160 1.5218 1.0811 8 6 7.4267 1.6037 2.2885 9 1 8.4301 2.0030 2.2985 10 6 6.8074 1.1473 3.5358 11 7 5.7116 0.4580 3.5003 12 14 7.5985 1.5598 5.1770 13 1 7.0619 2.8522 5.6741 14 1 7.2929 0.4871 6.1573 15 1 9.0693 1.6682 5.0041 16 6 7.4071 1.4379 -0.1483 17 6 6.7037 1.3583 -1.3153 18 7 7.4240 1.2698 -2.6052 19 8 6.7482 1.1924 -3.7329 20 8 8.7409 1.2685 -2.6253 21 6 5.3156 1.3594 -1.2977 22 1 2.9715 -0.4516 0.9227 23 1 2.9716 -0.5721 -0.8531 24 1 2.7539 1.8923 -1.0204 25 1 2.7538 2.0128 0.7555 26 1 4.7631 1.5951 2.0167 27 1 5.3014 0.1563 4.3258 28 1 8.4870 1.4366 -0.1647 29 1 4.7686 1.2963 -2.2268 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396017731.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:19 Heat of formation + Delta-G solvation = 34.548104 kcal Electronic energy + Delta-G solvation = -16520.269478 eV Core-core repulsion = 13604.421538 eV Total energy + Delta-G solvation = -2915.847939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.72336 -39.22599 -37.80179 -35.92394 -35.40748 -34.80957 -32.28725 -31.02306 -27.49091 -27.16090 -25.58374 -22.85505 -21.76395 -19.75585 -18.99296 -18.38831 -18.12271 -17.12058 -16.89668 -16.65629 -16.25703 -15.32591 -15.15854 -14.75380 -14.31578 -13.73946 -13.45758 -13.39562 -13.23523 -12.99279 -12.89118 -12.50358 -12.47002 -12.38596 -12.18685 -11.94005 -11.79402 -11.74115 -11.54547 -11.22468 -9.91929 -9.70677 -8.91120 -6.53315 -1.50719 0.40005 0.64884 0.78975 1.43615 1.47669 1.54393 1.81950 1.85681 2.15957 2.43221 3.07921 3.31546 3.95983 4.17859 4.26730 4.34356 4.46205 4.57320 4.66671 4.69375 4.79565 4.95643 5.01133 5.21724 5.29468 5.36751 5.70478 5.80693 5.90383 6.00764 6.33497 6.52722 6.62986 6.68910 8.00538 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.009324 C = 0.005384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.425758 B = 3002.292387 C = 5198.933442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.244 3.756 3 C -0.016 4.016 4 C -0.059 4.059 5 C -0.049 4.049 6 C -0.124 4.124 7 C 0.085 3.915 8 C -0.477 4.477 9 H 0.084 0.916 10 C 0.048 3.952 11 N -0.768 5.768 12 Si 0.987 3.013 13 H -0.256 1.256 14 H -0.262 1.262 15 H -0.263 1.263 16 C -0.206 4.206 17 C 0.030 3.970 18 N -0.004 5.004 19 O -0.193 6.193 20 O -0.246 6.246 21 C -0.184 4.184 22 H 0.123 0.877 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.141 0.859 27 H 0.308 0.692 28 H 0.109 0.891 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 0.171 3.427 4.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.073 4.073 3 C -0.056 4.056 4 C -0.098 4.098 5 C -0.051 4.051 6 C -0.144 4.144 7 C 0.081 3.919 8 C -0.502 4.502 9 H 0.102 0.898 10 C -0.177 4.177 11 N -0.389 5.389 12 Si 0.807 3.193 13 H -0.181 1.181 14 H -0.186 1.186 15 H -0.187 1.187 16 C -0.227 4.227 17 C -0.056 4.056 18 N 0.466 4.534 19 O -0.389 6.389 20 O -0.426 6.426 21 C -0.205 4.205 22 H 0.140 0.860 23 H 0.145 0.855 24 H 0.110 0.890 25 H 0.106 0.894 26 H 0.158 0.842 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.575 0.051 4.111 6.927 hybrid contribution 1.413 0.009 0.000 1.413 sum -4.161 0.059 4.111 5.850 Atomic orbital electron populations 1.81220 1.14616 1.10513 1.11426 1.29554 0.95363 0.91335 0.90999 1.19412 0.79302 0.99241 1.07652 1.20379 0.89108 0.95485 1.04786 1.19173 0.95590 0.99429 0.90885 1.21683 0.93527 1.01131 0.98086 1.17682 0.93034 0.90298 0.90874 1.21046 1.01771 1.36568 0.90860 0.89834 1.28097 0.94354 0.91078 1.04219 1.68967 1.15803 1.20372 1.33736 0.85084 0.79647 0.79600 0.74930 1.18054 1.18579 1.18699 1.20777 0.99520 1.11528 0.90895 1.20223 0.92742 1.14103 0.78543 1.51108 1.02812 0.94168 1.05330 1.96129 1.67129 1.55609 1.20050 1.96195 0.90475 1.59635 1.96343 1.20488 0.89092 1.10920 0.99964 0.85951 0.85496 0.88970 0.89415 0.84160 0.87857 0.87249 0.84042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.78 18.54 20.00 0.37 -14.41 15 2 C 0.24 5.78 15.43 89.44 1.38 7.16 15 3 C -0.02 -0.32 5.68 28.79 0.16 -0.16 15 4 C -0.06 -1.34 5.29 29.85 0.16 -1.19 15 5 C -0.05 -1.59 5.10 -20.14 -0.10 -1.69 15 6 C -0.12 -4.75 8.35 22.61 0.19 -4.56 15 7 C 0.08 3.72 5.62 -21.27 -0.12 3.60 15 8 C -0.48 -20.91 9.32 24.95 0.23 -20.68 15 9 H 0.08 3.66 7.96 -2.91 -0.02 3.64 15 10 C 0.05 1.87 5.41 87.20 0.47 2.34 15 11 N -0.77 -29.21 10.84 23.21 0.25 -28.96 15 12 Si 0.99 29.75 29.66 68.60 2.03 31.79 15 13 H -0.26 -7.50 7.11 99.48 0.71 -6.79 15 14 H -0.26 -7.41 7.11 99.48 0.71 -6.71 15 15 H -0.26 -8.22 7.11 99.48 0.71 -7.51 15 16 C -0.21 -9.27 9.30 22.61 0.21 -9.06 15 17 C 0.03 1.27 6.84 36.11 0.25 1.52 15 18 N 0.00 -0.17 4.98 -47.11 -0.23 -0.41 15 19 O -0.19 -8.29 19.14 3.51 0.07 -8.22 15 20 O -0.25 -11.63 19.12 3.52 0.07 -11.56 15 21 C -0.18 -6.58 9.25 22.54 0.21 -6.37 15 22 H 0.12 2.38 8.14 -2.39 -0.02 2.36 15 23 H 0.13 2.15 8.14 -2.39 -0.02 2.13 15 24 H 0.09 1.84 8.08 -2.39 -0.02 1.82 15 25 H 0.09 1.90 8.07 -2.39 -0.02 1.88 15 26 H 0.14 5.28 6.06 -2.91 -0.02 5.26 15 27 H 0.31 10.21 8.27 -92.71 -0.77 9.45 15 28 H 0.11 5.08 7.54 -2.91 -0.02 5.06 15 29 H 0.14 4.50 7.56 -2.91 -0.02 4.48 15 Total: -1.00 -52.58 279.01 6.79 -45.79 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.19 Total: 15.07 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 3.04 Total: -29.09 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.39 Total: -43.78 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.13 Total: -19.78 kcal Atomic # 14 Polarization: 29.75 SS G_CDS: 2.03 Total: 31.79 kcal Total: -52.58 6.79 -45.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396017731.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.338 kcal (2) G-P(sol) polarization free energy of solvation -52.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds