Wall clock time and date at job start Mon Mar 30 2020 06:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47325 * 211.70690 * 3 2 1 5 5 C 1.50705 * 109.47370 * 179.97438 * 4 3 2 6 6 C 1.36523 * 120.15446 * 265.02307 * 5 4 3 7 7 C 1.38768 * 120.29902 * 179.97438 * 6 5 4 8 8 N 1.48012 * 119.69973 * 179.97438 * 7 6 5 9 9 O 1.31696 * 120.00137 * 359.97438 * 8 7 6 10 10 O 1.31701 * 119.99911 * 179.97438 * 8 7 6 11 11 C 1.38824 * 120.60036 * 359.97242 * 7 6 5 12 12 C 1.36484 * 120.29683 * 359.78499 * 11 7 6 13 13 C 1.41259 * 120.15231 * 84.99764 * 5 4 3 14 14 C 1.40336 * 120.29134 * 0.02562 * 13 5 4 15 15 H 1.08001 * 120.00441 * 27.90410 * 14 13 5 16 16 C 1.46551 * 120.00047 * 207.90614 * 14 13 5 17 17 N 1.29499 * 119.99910 * 195.99830 * 16 14 13 18 18 Si 1.86796 * 119.99891 * 15.99685 * 16 14 13 19 19 H 1.48497 * 109.46972 * 270.00102 * 18 16 14 20 20 H 1.48503 * 109.47152 * 30.00241 * 18 16 14 21 21 H 1.48500 * 109.47306 * 150.00131 * 18 16 14 22 22 H 1.08998 * 109.47659 * 91.70224 * 3 2 1 23 23 H 1.09009 * 109.46792 * 331.70448 * 3 2 1 24 24 H 1.09004 * 109.47205 * 59.99920 * 4 3 2 25 25 H 1.08997 * 109.46717 * 299.99868 * 4 3 2 26 26 H 1.08005 * 119.84861 * 359.95309 * 6 5 4 27 27 H 1.07996 * 119.85112 * 180.02562 * 11 7 6 28 28 H 1.07996 * 120.15412 * 180.23390 * 12 11 7 29 29 H 0.97006 * 120.00324 * 355.34051 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.2281 0.7581 5 6 4.6245 1.2284 0.7587 6 6 5.3100 0.6978 1.8133 7 6 6.6977 0.6960 1.8167 8 7 7.4275 0.1178 2.9673 9 8 6.7600 -0.3915 3.9818 10 8 8.7445 0.1126 2.9764 11 6 7.4077 1.2317 0.7508 12 6 6.7471 1.7640 -0.3184 13 6 5.3343 1.7773 -0.3323 14 6 4.6423 2.3261 -1.4229 15 1 3.6570 2.7451 -1.2819 16 6 5.2567 2.3305 -2.7534 17 7 4.7793 3.0935 -3.6845 18 14 6.7286 1.2358 -3.1061 19 1 7.9797 1.9742 -2.7984 20 1 6.6527 0.0169 -2.2613 21 1 6.7236 0.8460 -4.5390 22 1 2.9713 0.0313 -1.0272 23 1 2.9716 -0.9041 0.4872 24 1 2.7541 1.1973 1.7854 25 1 2.7537 2.1327 0.2710 26 1 4.7698 0.2777 2.6490 27 1 8.4875 1.2236 0.7658 28 1 7.3017 2.1767 -1.1481 29 1 3.9749 3.6109 -3.5227 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396018444.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:36 Heat of formation + Delta-G solvation = 21.932103 kcal Electronic energy + Delta-G solvation = -16784.750293 eV Core-core repulsion = 13868.355282 eV Total energy + Delta-G solvation = -2916.395010 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67756 -38.81684 -37.75241 -36.12908 -35.04114 -34.61264 -32.80558 -31.00026 -28.68447 -25.91313 -24.91416 -23.43943 -21.50795 -20.62817 -18.82122 -18.45930 -18.24533 -16.81851 -16.67867 -16.32983 -16.23635 -15.49680 -15.16190 -14.76504 -14.64349 -14.29518 -13.57777 -13.50489 -13.36634 -13.15354 -12.83415 -12.51917 -12.32828 -11.95537 -11.75935 -11.71253 -11.57960 -11.45493 -11.39057 -11.13190 -10.23716 -9.93385 -9.75727 -7.03474 -1.22345 0.63645 0.70844 1.10197 1.38650 1.54078 1.78932 1.82950 1.86178 2.01793 2.23301 2.96833 3.15095 3.89561 4.00100 4.21544 4.35704 4.39338 4.47612 4.55178 4.71248 4.82631 4.83425 5.06597 5.07387 5.22349 5.26296 5.44967 5.53074 5.63796 5.88123 5.98056 6.26420 6.51874 6.63819 7.37333 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014292 B = 0.010129 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.727130 B = 2763.558652 C = 4420.406879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.242 3.758 3 C -0.020 4.020 4 C -0.050 4.050 5 C -0.141 4.141 6 C -0.029 4.029 7 C -0.129 4.129 8 N 0.044 4.956 9 O -0.369 6.369 10 O -0.379 6.379 11 C -0.029 4.029 12 C -0.214 4.214 13 C 0.062 3.938 14 C -0.344 4.344 15 H 0.120 0.880 16 C 0.017 3.983 17 N -0.715 5.715 18 Si 1.077 2.923 19 H -0.253 1.253 20 H -0.246 1.246 21 H -0.271 1.271 22 H 0.126 0.874 23 H 0.127 0.873 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.132 0.868 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 1.082 -6.972 7.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.074 4.074 3 C -0.060 4.060 4 C -0.089 4.089 5 C -0.145 4.145 6 C -0.049 4.049 7 C -0.236 4.236 8 N 0.447 4.553 9 O -0.512 6.512 10 O -0.520 6.520 11 C -0.048 4.048 12 C -0.235 4.235 13 C 0.058 3.942 14 C -0.369 4.369 15 H 0.138 0.862 16 C -0.216 4.216 17 N -0.331 5.331 18 Si 0.896 3.104 19 H -0.178 1.178 20 H -0.170 1.170 21 H -0.197 1.197 22 H 0.144 0.856 23 H 0.145 0.855 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.150 0.850 27 H 0.143 0.857 28 H 0.155 0.845 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.018 0.803 -8.187 9.156 hybrid contribution -0.282 0.506 1.718 1.813 sum -4.300 1.310 -6.469 7.878 Atomic orbital electron populations 1.81220 1.14722 1.10819 1.11266 1.29652 0.95481 0.91210 0.91044 1.19483 0.79129 1.01682 1.05719 1.20201 0.89351 0.97790 1.01558 1.19393 0.95301 1.04948 0.94882 1.20199 0.89995 0.96408 0.98282 1.20166 0.92326 1.20985 0.90092 1.50188 1.01947 0.99910 1.03218 1.96048 1.67929 1.57915 1.29322 1.96060 0.91314 1.73793 1.90827 1.20300 1.00124 0.93053 0.91355 1.21111 0.94485 1.08373 0.99548 1.17939 0.91758 0.91049 0.93469 1.23297 1.03139 1.18087 0.92348 0.86193 1.29948 1.04040 0.96233 0.91396 1.70023 1.16259 1.10145 1.36658 0.83532 0.72430 0.76669 0.77775 1.17821 1.16987 1.19722 0.85572 0.85499 0.89860 0.89594 0.85047 0.85741 0.84524 0.87119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -14.89 18.54 20.00 0.37 -14.52 15 2 C 0.24 5.71 15.43 89.44 1.38 7.09 15 3 C -0.02 -0.38 5.68 28.79 0.16 -0.22 15 4 C -0.05 -1.12 4.83 29.85 0.14 -0.97 15 5 C -0.14 -4.18 5.17 -19.52 -0.10 -4.29 15 6 C -0.03 -1.04 9.13 22.00 0.20 -0.84 15 7 C -0.13 -5.50 6.91 36.64 0.25 -5.24 15 8 N 0.04 2.25 4.98 -45.83 -0.23 2.02 15 9 O -0.37 -19.69 19.13 3.52 0.07 -19.62 15 10 O -0.38 -20.60 19.13 3.51 0.07 -20.54 15 11 C -0.03 -1.10 9.51 22.00 0.21 -0.89 15 12 C -0.21 -7.21 7.29 22.61 0.16 -7.05 15 13 C 0.06 1.95 5.25 -21.27 -0.11 1.84 15 14 C -0.34 -9.94 8.97 24.95 0.22 -9.71 15 15 H 0.12 3.21 6.57 -2.91 -0.02 3.20 15 16 C 0.02 0.51 5.61 87.21 0.49 1.00 15 17 N -0.71 -22.23 13.58 23.21 0.32 -21.92 15 18 Si 1.08 29.40 24.97 68.60 1.71 31.11 15 19 H -0.25 -6.67 6.54 99.48 0.65 -6.02 15 20 H -0.25 -6.82 6.95 99.48 0.69 -6.13 15 21 H -0.27 -7.36 7.11 99.48 0.71 -6.65 15 22 H 0.13 2.19 7.99 -2.39 -0.02 2.17 15 23 H 0.13 2.05 8.14 -2.38 -0.02 2.04 15 24 H 0.08 1.71 8.05 -2.39 -0.02 1.69 15 25 H 0.09 1.81 6.52 -2.39 -0.02 1.80 15 26 H 0.13 4.53 7.55 -2.91 -0.02 4.50 15 27 H 0.12 4.75 7.56 -2.91 -0.02 4.73 15 28 H 0.14 4.17 4.24 -2.91 -0.01 4.16 15 29 H 0.31 9.05 8.74 -92.70 -0.81 8.24 15 Total: -1.00 -55.44 270.06 6.41 -49.03 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.09 Total: 13.73 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: 3.02 Total: -19.29 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.46 Total: -34.42 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: 0.13 Total: -40.15 kcal Atomic # 14 Polarization: 29.40 SS G_CDS: 1.71 Total: 31.11 kcal Total: -55.44 6.41 -49.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396018444.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.958 kcal (2) G-P(sol) polarization free energy of solvation -55.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds