Wall clock time and date at job start Mon Mar 30 2020 06:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47180 * 103.00841 * 3 2 1 5 5 C 1.50694 * 109.47241 * 179.97438 * 4 3 2 6 6 C 1.36524 * 120.15287 * 265.00061 * 5 4 3 7 7 C 1.38773 * 120.30010 * 179.97438 * 6 5 4 8 8 C 1.38825 * 120.59650 * 0.04645 * 7 6 5 9 9 C 1.36486 * 120.29825 * 359.97396 * 8 7 6 10 10 N 1.48014 * 120.15392 * 179.97438 * 9 8 7 11 11 O 1.31708 * 119.99840 * 5.93983 * 10 9 8 12 12 O 1.31696 * 120.00274 * 185.94312 * 10 9 8 13 13 C 1.41257 * 120.15353 * 84.72489 * 5 4 3 14 14 C 1.40340 * 120.29103 * 0.02562 * 13 5 4 15 15 H 1.08003 * 120.00097 * 232.34660 * 14 13 5 16 16 C 1.46544 * 120.00327 * 52.34859 * 14 13 5 17 17 N 1.29505 * 120.00231 * 201.34141 * 16 14 13 18 18 Si 1.86796 * 119.99790 * 21.33344 * 16 14 13 19 19 H 1.48504 * 109.47153 * 95.17678 * 18 16 14 20 20 H 1.48503 * 109.47530 * 215.17612 * 18 16 14 21 21 H 1.48500 * 109.47676 * 335.17915 * 18 16 14 22 22 H 1.09003 * 109.47119 * 343.00913 * 3 2 1 23 23 H 1.09005 * 109.46823 * 223.00920 * 3 2 1 24 24 H 1.09003 * 109.47036 * 60.00021 * 4 3 2 25 25 H 1.08997 * 109.47234 * 300.00438 * 4 3 2 26 26 H 1.07997 * 119.85704 * 0.02562 * 6 5 4 27 27 H 1.08001 * 119.70513 * 180.02562 * 7 6 5 28 28 H 1.08000 * 119.84834 * 180.02562 * 8 7 6 29 29 H 0.96995 * 119.99665 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3256 -1.4054 5 6 4.6248 0.3269 -1.4053 6 6 5.3095 1.4965 -1.2410 7 6 6.6973 1.5011 -1.2398 8 6 7.4080 0.3203 -1.4062 9 6 6.7482 -0.8628 -1.5729 10 7 7.5091 -2.1199 -1.7507 11 8 8.8208 -2.1181 -1.6318 12 8 6.8747 -3.2402 -2.0278 13 6 5.3354 -0.8829 -1.5694 14 6 4.6442 -2.0931 -1.7341 15 1 4.8753 -2.9374 -1.1014 16 6 3.6090 -2.2114 -2.7646 17 7 2.7022 -3.1310 -2.6690 18 14 3.5972 -1.0355 -4.2159 19 1 4.3052 -1.6581 -5.3633 20 1 2.1941 -0.7393 -4.6018 21 1 4.2830 0.2259 -3.8367 22 1 2.9718 -0.9820 0.3003 23 1 2.9710 0.7523 0.7010 24 1 2.7541 1.3082 -1.7058 25 1 2.7548 -0.4260 -2.1064 26 1 4.7689 2.4222 -1.1104 27 1 7.2292 2.4318 -1.1086 28 1 8.4878 0.3378 -1.4030 29 1 2.0168 -3.2090 -3.3508 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396020474.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:41 Heat of formation + Delta-G solvation = 43.423175 kcal Electronic energy + Delta-G solvation = -17391.713962 eV Core-core repulsion = 14476.250875 eV Total energy + Delta-G solvation = -2915.463087 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69473 -38.51071 -37.65175 -36.23638 -34.71798 -34.40352 -32.68092 -31.12440 -28.11394 -26.24698 -25.58226 -22.45785 -21.67890 -20.17453 -18.45500 -18.24756 -18.11096 -17.38929 -16.37916 -16.11406 -16.06982 -15.35047 -15.20074 -14.86682 -14.60452 -14.25827 -13.65597 -13.59134 -13.33761 -13.07557 -13.01901 -12.43999 -12.33216 -12.01637 -11.86074 -11.59516 -11.46496 -11.33210 -11.17141 -11.13152 -9.90339 -9.66277 -9.33832 -6.80333 -1.09048 0.51926 0.88069 1.16406 1.28501 1.34433 1.37218 1.84546 1.89427 1.89521 2.22892 2.93744 3.16728 3.94155 4.15870 4.23444 4.36679 4.37983 4.55121 4.59583 4.70419 4.78754 4.97312 5.12901 5.22965 5.35258 5.53863 5.57686 5.71958 5.84339 5.89116 6.10281 6.36107 6.66672 6.78981 7.50180 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.010340 C = 0.008529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.265271 B = 2707.308066 C = 3282.037414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.241 3.759 3 C -0.017 4.017 4 C -0.069 4.069 5 C -0.117 4.117 6 C -0.056 4.056 7 C -0.156 4.156 8 C -0.078 4.078 9 C -0.075 4.075 10 N 0.023 4.977 11 O -0.433 6.433 12 O -0.356 6.356 13 C 0.042 3.958 14 C -0.281 4.281 15 H 0.080 0.920 16 C 0.049 3.951 17 N -0.724 5.724 18 Si 0.931 3.069 19 H -0.282 1.282 20 H -0.228 1.228 21 H -0.201 1.201 22 H 0.104 0.896 23 H 0.151 0.849 24 H 0.118 0.882 25 H 0.056 0.944 26 H 0.177 0.823 27 H 0.163 0.837 28 H 0.117 0.883 29 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.463 13.841 0.509 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.076 4.076 3 C -0.057 4.057 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.074 4.074 7 C -0.177 4.177 8 C -0.097 4.097 9 C -0.182 4.182 10 N 0.412 4.588 11 O -0.557 6.557 12 O -0.496 6.496 13 C 0.037 3.963 14 C -0.312 4.312 15 H 0.098 0.902 16 C -0.182 4.182 17 N -0.345 5.345 18 Si 0.748 3.252 19 H -0.209 1.209 20 H -0.150 1.150 21 H -0.122 1.122 22 H 0.122 0.878 23 H 0.169 0.831 24 H 0.137 0.863 25 H 0.074 0.926 26 H 0.194 0.806 27 H 0.180 0.820 28 H 0.135 0.865 29 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.197 13.727 0.533 15.509 hybrid contribution 1.118 -1.535 -0.565 1.981 sum -6.079 12.193 -0.033 13.624 Atomic orbital electron populations 1.81193 1.14651 1.11423 1.10550 1.29662 0.95556 0.90992 0.91356 1.19434 0.79235 1.07099 0.99910 1.20581 0.90368 1.04034 0.95756 1.19728 0.94943 0.91535 1.05696 1.21220 0.93694 0.97919 0.94598 1.21267 0.94536 0.96286 1.05609 1.20573 1.00333 0.91044 0.97728 1.20734 0.91696 0.81749 1.23998 1.49951 1.01543 1.04089 1.03242 1.95988 0.92797 1.95496 1.71397 1.96057 1.70253 1.20377 1.62945 1.17354 0.88047 0.94663 0.96192 1.21589 1.04878 0.97568 1.07196 0.90223 1.28567 0.91054 0.96846 1.01749 1.68948 1.07135 1.24776 1.33668 0.86032 0.81811 0.81588 0.75814 1.20878 1.15045 1.12214 0.87816 0.83141 0.86347 0.92607 0.80563 0.81957 0.86547 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.61 18.54 20.01 0.37 -15.24 15 2 C 0.24 6.13 15.43 89.44 1.38 7.51 15 3 C -0.02 -0.35 5.68 28.79 0.16 -0.19 15 4 C -0.07 -1.59 3.94 29.85 0.12 -1.47 15 5 C -0.12 -3.33 3.45 -19.52 -0.07 -3.40 15 6 C -0.06 -1.23 9.61 22.00 0.21 -1.02 15 7 C -0.16 -3.99 10.06 22.54 0.23 -3.76 15 8 C -0.08 -2.91 9.53 22.00 0.21 -2.70 15 9 C -0.08 -3.48 6.90 36.72 0.25 -3.23 15 10 N 0.02 1.31 4.98 -45.65 -0.23 1.08 15 11 O -0.43 -26.29 19.15 3.50 0.07 -26.22 15 12 O -0.36 -22.12 16.70 3.52 0.06 -22.07 15 13 C 0.04 1.71 4.46 -21.27 -0.09 1.62 15 14 C -0.28 -12.68 6.97 24.95 0.17 -12.50 15 15 H 0.08 4.25 7.11 -2.91 -0.02 4.23 15 16 C 0.05 1.99 4.17 87.20 0.36 2.35 15 17 N -0.72 -29.61 13.89 23.21 0.32 -29.28 15 18 Si 0.93 30.88 25.09 68.60 1.72 32.61 15 19 H -0.28 -10.52 7.11 99.48 0.71 -9.81 15 20 H -0.23 -6.35 7.11 99.48 0.71 -5.65 15 21 H -0.20 -6.02 5.81 99.48 0.58 -5.44 15 22 H 0.10 2.55 7.96 -2.39 -0.02 2.53 15 23 H 0.15 1.87 8.14 -2.38 -0.02 1.85 15 24 H 0.12 1.79 8.05 -2.39 -0.02 1.77 15 25 H 0.06 1.56 3.07 -2.39 -0.01 1.55 15 26 H 0.18 1.99 8.06 -2.91 -0.02 1.96 15 27 H 0.16 2.82 8.06 -2.91 -0.02 2.80 15 28 H 0.12 4.49 7.56 -2.91 -0.02 4.47 15 29 H 0.32 11.41 8.27 -92.71 -0.77 10.64 15 Total: -1.00 -71.32 264.83 6.32 -65.00 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.07 Total: 10.91 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 2.94 Total: -16.79 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.47 Total: -43.44 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: 0.13 Total: -48.29 kcal Atomic # 14 Polarization: 30.88 SS G_CDS: 1.72 Total: 32.61 kcal Total: -71.32 6.32 -65.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396020474.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.424 kcal (2) G-P(sol) polarization free energy of solvation -71.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds