Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47107 * 218.66115 * 3 2 1 5 5 C 1.50708 * 109.47371 * 180.02562 * 4 3 2 6 6 C 1.41288 * 120.15117 * 88.22054 * 5 4 3 7 7 C 1.40346 * 120.29403 * 0.02562 * 6 5 4 8 8 H 1.07995 * 120.00237 * 329.14653 * 7 6 5 9 9 C 1.46543 * 120.00015 * 149.13989 * 7 6 5 10 10 N 1.29508 * 119.99581 * 347.97101 * 9 7 6 11 11 Si 1.86790 * 120.00054 * 167.97398 * 9 7 6 12 12 H 1.48502 * 109.47301 * 59.99995 * 11 9 7 13 13 H 1.48503 * 109.47043 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47195 * 300.00003 * 11 9 7 15 15 C 1.41262 * 119.41674 * 180.02562 * 6 5 4 16 16 C 1.36520 * 119.69019 * 359.97438 * 15 6 5 17 17 C 1.38775 * 120.30427 * 359.97438 * 16 15 6 18 18 C 1.36488 * 120.15181 * 267.94884 * 5 4 3 19 19 N 1.48010 * 119.85377 * 359.97438 * 18 5 4 20 20 O 1.31695 * 119.99805 * 218.61941 * 19 18 5 21 21 O 1.31696 * 119.99935 * 38.61421 * 19 18 5 22 22 H 1.08999 * 109.47653 * 338.66162 * 3 2 1 23 23 H 1.09003 * 109.47550 * 98.66320 * 3 2 1 24 24 H 1.09003 * 109.47371 * 299.99930 * 4 3 2 25 25 H 1.09002 * 109.47314 * 60.00469 * 4 3 2 26 26 H 0.97006 * 119.99570 * 179.97438 * 10 9 7 27 27 H 1.07998 * 120.15349 * 179.97438 * 15 6 5 28 28 H 1.08002 * 119.85076 * 179.97438 * 16 15 6 29 29 H 1.07994 * 119.70536 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1272 0.9011 5 6 4.6245 1.1284 0.9007 6 6 5.3334 1.8623 -0.0767 7 6 4.6403 2.5951 -1.0525 8 1 3.6754 2.2554 -1.3990 9 6 5.2257 3.8213 -1.6014 10 7 6.2586 4.3565 -1.0324 11 14 4.4820 4.6122 -3.1214 12 1 3.0698 4.9805 -2.8471 13 1 5.2523 5.8326 -3.4714 14 1 4.5324 3.6527 -4.2536 15 6 6.7459 1.8520 -0.0629 16 6 7.4076 1.1355 0.8923 17 6 6.6991 0.4198 1.8471 18 6 5.3109 0.4249 1.8477 19 7 4.5719 -0.3398 2.8772 20 8 5.0152 -0.3738 4.1168 21 8 3.4710 -0.9861 2.5535 22 1 2.9718 -0.9564 0.3739 23 1 2.9713 0.1556 -1.0159 24 1 2.7537 2.0843 0.5272 25 1 2.7543 0.9723 1.9171 26 1 6.6464 5.1680 -1.3959 27 1 7.2997 2.4085 -0.8046 28 1 8.4875 1.1255 0.9049 29 1 7.2325 -0.1441 2.5980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396022371.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = 51.661735 kcal Electronic energy + Delta-G solvation = -17115.870334 eV Core-core repulsion = 14200.764498 eV Total energy + Delta-G solvation = -2915.105837 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.33567 -37.40413 -36.36364 -34.13838 -33.99810 -33.13900 -30.74953 -29.66255 -26.10844 -25.47008 -23.78852 -21.32711 -20.19885 -18.40078 -17.39196 -17.06523 -16.49087 -15.85997 -15.36249 -14.88374 -14.61067 -13.71936 -13.62588 -13.32985 -12.88187 -12.42184 -12.06016 -11.99843 -11.74821 -11.60282 -11.42363 -11.10161 -10.98757 -10.79095 -10.67500 -10.42918 -10.15890 -10.00590 -9.84190 -9.73695 -8.36505 -8.04848 -7.40192 -4.92045 0.28740 2.03142 2.20703 2.23854 2.77884 2.78492 2.82232 3.18966 3.21914 3.50531 3.97428 4.47829 4.87613 5.47996 5.52739 5.70489 5.79773 5.87349 6.08041 6.16970 6.23697 6.30558 6.37377 6.52867 6.60457 6.89842 6.98004 7.26705 7.35981 7.47677 7.58015 7.90558 7.98316 8.11175 8.28657 9.50668 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.009504 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.453277 B = 2945.517969 C = 4314.722252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.225 3.775 3 C -0.024 4.024 4 C -0.056 4.056 5 C -0.158 4.158 6 C 0.118 3.882 7 C -0.448 4.448 8 H 0.095 0.905 9 C 0.075 3.925 10 N -0.753 5.753 11 Si 0.921 3.079 12 H -0.258 1.258 13 H -0.274 1.274 14 H -0.256 1.256 15 C -0.130 4.130 16 C -0.091 4.091 17 C -0.202 4.202 18 C 0.055 3.945 19 N -0.011 5.011 20 O -0.201 6.201 21 O -0.185 6.185 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.296 0.704 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -0.481 -3.311 4.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.091 4.091 3 C -0.064 4.064 4 C -0.095 4.095 5 C -0.161 4.161 6 C 0.114 3.886 7 C -0.474 4.474 8 H 0.113 0.887 9 C -0.152 4.152 10 N -0.373 5.373 11 Si 0.744 3.256 12 H -0.182 1.182 13 H -0.198 1.198 14 H -0.180 1.180 15 C -0.150 4.150 16 C -0.110 4.110 17 C -0.223 4.223 18 C -0.029 4.029 19 N 0.468 4.532 20 O -0.394 6.394 21 O -0.381 6.381 22 H 0.132 0.868 23 H 0.127 0.873 24 H 0.103 0.897 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.351 0.071 -3.748 3.985 hybrid contribution 0.173 0.253 -0.121 0.329 sum 1.524 0.323 -3.870 4.171 Atomic orbital electron populations 1.81119 1.13253 1.09821 1.09991 1.29412 0.95402 0.92213 0.92106 1.19439 0.80749 1.02822 1.03346 1.20184 0.91719 0.98325 0.99245 1.19167 0.94387 1.06375 0.96183 1.17247 0.91509 0.89831 0.90013 1.20747 1.04583 1.04709 1.17344 0.88697 1.27500 0.93535 0.96682 0.97499 1.69048 1.16926 1.16325 1.35048 0.86118 0.80470 0.78726 0.80315 1.18190 1.19826 1.17964 1.21466 0.94524 0.99555 0.99418 1.20386 0.98487 0.97187 0.94958 1.20161 0.89665 1.08338 1.04102 1.19773 0.91335 1.00916 0.90873 1.50963 1.00800 0.97918 1.03521 1.96200 1.71934 1.70234 1.01024 1.96145 1.11172 1.43444 1.87373 0.86764 0.87282 0.89694 0.91867 0.89103 0.85442 0.86990 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.74 18.54 42.15 0.78 -7.96 15 2 C 0.23 3.82 15.43 -20.76 -0.32 3.50 15 3 C -0.02 -0.37 5.28 -29.52 -0.16 -0.53 15 4 C -0.06 -1.02 3.91 -27.88 -0.11 -1.13 15 5 C -0.16 -3.21 5.17 -104.09 -0.54 -3.74 15 6 C 0.12 2.47 5.55 -106.80 -0.59 1.88 15 7 C -0.45 -9.19 8.26 -35.44 -0.29 -9.48 15 8 H 0.10 1.82 6.59 -52.49 -0.35 1.47 15 9 C 0.08 1.49 5.38 -15.19 -0.08 1.41 15 10 N -0.75 -15.44 11.21 55.99 0.63 -14.81 15 11 Si 0.92 15.04 29.66 -169.99 -5.04 9.99 15 12 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 13 H -0.27 -4.39 7.11 56.52 0.40 -3.99 15 14 H -0.26 -4.14 7.11 56.52 0.40 -3.74 15 15 C -0.13 -2.66 8.68 -39.05 -0.34 -3.00 15 16 C -0.09 -1.71 9.98 -40.00 -0.40 -2.11 15 17 C -0.20 -3.98 9.71 -39.17 -0.38 -4.36 15 18 C 0.05 1.14 6.48 -80.37 -0.52 0.62 15 19 N -0.01 -0.23 4.54 33.76 0.15 -0.08 15 20 O -0.20 -4.42 19.72 -31.57 -0.62 -5.04 15 21 O -0.19 -3.81 15.54 -31.57 -0.49 -4.30 15 22 H 0.11 1.78 6.51 -51.93 -0.34 1.44 15 23 H 0.11 1.55 7.59 -51.93 -0.39 1.16 15 24 H 0.08 1.54 6.98 -51.93 -0.36 1.18 15 25 H 0.06 1.21 6.36 -51.93 -0.33 0.88 15 26 H 0.30 5.46 8.27 -40.82 -0.34 5.12 15 27 H 0.13 2.62 6.48 -52.49 -0.34 2.28 15 28 H 0.11 1.79 8.06 -52.49 -0.42 1.36 15 29 H 0.11 2.09 8.04 -52.49 -0.42 1.67 15 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -23.80 269.26 -6.35 -30.15 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.09 Total: 4.93 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.73 Total: -16.95 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 1.56 Total: -22.85 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -1.11 Total: -9.34 kcal Atomic # 14 Polarization: 15.04 SS G_CDS: -5.04 Total: 9.99 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -23.80 -6.35 -30.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396022371.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.811 kcal (2) G-P(sol) polarization free energy of solvation -23.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds