Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47107 * 218.66115 * 3 2 1 5 5 C 1.50708 * 109.47371 * 180.02562 * 4 3 2 6 6 C 1.41288 * 120.15117 * 88.22054 * 5 4 3 7 7 C 1.40346 * 120.29403 * 0.02562 * 6 5 4 8 8 H 1.07995 * 120.00237 * 329.14653 * 7 6 5 9 9 C 1.46543 * 120.00015 * 149.13989 * 7 6 5 10 10 N 1.29508 * 119.99581 * 347.97101 * 9 7 6 11 11 Si 1.86790 * 120.00054 * 167.97398 * 9 7 6 12 12 H 1.48502 * 109.47301 * 59.99995 * 11 9 7 13 13 H 1.48503 * 109.47043 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47195 * 300.00003 * 11 9 7 15 15 C 1.41262 * 119.41674 * 180.02562 * 6 5 4 16 16 C 1.36520 * 119.69019 * 359.97438 * 15 6 5 17 17 C 1.38775 * 120.30427 * 359.97438 * 16 15 6 18 18 C 1.36488 * 120.15181 * 267.94884 * 5 4 3 19 19 N 1.48010 * 119.85377 * 359.97438 * 18 5 4 20 20 O 1.31695 * 119.99805 * 218.61941 * 19 18 5 21 21 O 1.31696 * 119.99935 * 38.61421 * 19 18 5 22 22 H 1.08999 * 109.47653 * 338.66162 * 3 2 1 23 23 H 1.09003 * 109.47550 * 98.66320 * 3 2 1 24 24 H 1.09003 * 109.47371 * 299.99930 * 4 3 2 25 25 H 1.09002 * 109.47314 * 60.00469 * 4 3 2 26 26 H 0.97006 * 119.99570 * 179.97438 * 10 9 7 27 27 H 1.07998 * 120.15349 * 179.97438 * 15 6 5 28 28 H 1.08002 * 119.85076 * 179.97438 * 16 15 6 29 29 H 1.07994 * 119.70536 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.1272 0.9011 5 6 4.6245 1.1284 0.9007 6 6 5.3334 1.8623 -0.0767 7 6 4.6403 2.5951 -1.0525 8 1 3.6754 2.2554 -1.3990 9 6 5.2257 3.8213 -1.6014 10 7 6.2586 4.3565 -1.0324 11 14 4.4820 4.6122 -3.1214 12 1 3.0698 4.9805 -2.8471 13 1 5.2523 5.8326 -3.4714 14 1 4.5324 3.6527 -4.2536 15 6 6.7459 1.8520 -0.0629 16 6 7.4076 1.1355 0.8923 17 6 6.6991 0.4198 1.8471 18 6 5.3109 0.4249 1.8477 19 7 4.5719 -0.3398 2.8772 20 8 5.0152 -0.3738 4.1168 21 8 3.4710 -0.9861 2.5535 22 1 2.9718 -0.9564 0.3739 23 1 2.9713 0.1556 -1.0159 24 1 2.7537 2.0843 0.5272 25 1 2.7543 0.9723 1.9171 26 1 6.6464 5.1680 -1.3959 27 1 7.2997 2.4085 -0.8046 28 1 8.4875 1.1255 0.9049 29 1 7.2325 -0.1441 2.5980 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396022371.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = 42.240978 kcal Electronic energy + Delta-G solvation = -17116.278849 eV Core-core repulsion = 14200.764498 eV Total energy + Delta-G solvation = -2915.514351 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.92247 -39.02034 -37.78661 -35.67739 -35.58343 -34.67855 -32.32738 -31.14298 -27.66265 -27.06117 -25.26834 -22.90552 -21.74184 -19.95987 -19.05888 -18.44642 -18.06287 -17.38762 -16.88640 -16.37902 -16.08947 -15.19893 -15.07703 -14.75059 -14.33006 -13.89070 -13.53863 -13.46403 -13.21317 -12.99929 -12.87765 -12.62143 -12.45252 -12.31055 -12.14304 -11.91149 -11.77626 -11.52068 -11.43155 -11.19257 -9.93963 -9.59877 -8.88458 -6.48386 -1.37521 0.39472 0.63699 0.70244 1.45618 1.51335 1.54393 1.80708 1.85633 2.15968 2.48431 3.10524 3.32720 4.01286 4.05061 4.26163 4.33790 4.39329 4.59039 4.67077 4.75836 4.83983 4.93216 5.07730 5.13728 5.35194 5.43645 5.71971 5.80506 5.89401 5.98704 6.36961 6.56378 6.62317 6.73263 8.04902 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017882 B = 0.009504 C = 0.006488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.453277 B = 2945.517969 C = 4314.722252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.245 3.755 3 C -0.012 4.012 4 C -0.052 4.052 5 C -0.161 4.161 6 C 0.100 3.900 7 C -0.465 4.465 8 H 0.105 0.895 9 C 0.046 3.954 10 N -0.779 5.779 11 Si 0.982 3.018 12 H -0.262 1.262 13 H -0.269 1.269 14 H -0.251 1.251 15 C -0.144 4.144 16 C -0.085 4.085 17 C -0.208 4.208 18 C 0.039 3.961 19 N -0.010 5.010 20 O -0.235 6.235 21 O -0.165 6.165 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.083 0.917 25 H 0.051 0.949 26 H 0.304 0.696 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -0.321 -4.498 5.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.052 4.052 4 C -0.091 4.091 5 C -0.165 4.165 6 C 0.096 3.904 7 C -0.491 4.491 8 H 0.122 0.878 9 C -0.180 4.180 10 N -0.400 5.400 11 Si 0.803 3.197 12 H -0.187 1.187 13 H -0.193 1.193 14 H -0.175 1.175 15 C -0.164 4.164 16 C -0.104 4.104 17 C -0.229 4.229 18 C -0.045 4.045 19 N 0.467 4.533 20 O -0.419 6.419 21 O -0.368 6.368 22 H 0.138 0.862 23 H 0.148 0.852 24 H 0.102 0.898 25 H 0.070 0.930 26 H 0.117 0.883 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.509 0.240 -4.856 5.091 hybrid contribution 0.152 0.208 0.224 0.342 sum 1.661 0.447 -4.632 4.941 Atomic orbital electron populations 1.81143 1.14216 1.10868 1.11143 1.29488 0.95340 0.91212 0.91069 1.19407 0.79801 1.02047 1.03959 1.20134 0.90646 0.99223 0.99077 1.19326 0.95289 1.06002 0.95842 1.17498 0.92042 0.90315 0.90533 1.21050 1.05212 1.05176 1.17635 0.87759 1.28182 0.93680 0.96709 0.99389 1.69067 1.17789 1.16983 1.36136 0.85205 0.79270 0.78004 0.77257 1.18660 1.19328 1.17510 1.21544 0.94585 1.00191 1.00036 1.20661 0.99972 0.95900 0.93835 1.20400 0.89460 1.08505 1.04529 1.20038 0.91920 1.01492 0.91022 1.51063 1.00765 0.97871 1.03562 1.96204 1.72598 1.71678 1.01393 1.96118 1.10910 1.42514 1.87261 0.86172 0.85245 0.89804 0.93042 0.88286 0.85866 0.84052 0.85884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -18.03 18.54 20.00 0.37 -17.66 15 2 C 0.25 7.89 15.43 89.44 1.38 9.27 15 3 C -0.01 -0.37 5.28 28.79 0.15 -0.21 15 4 C -0.05 -1.84 3.91 29.85 0.12 -1.72 15 5 C -0.16 -6.40 5.17 -19.52 -0.10 -6.50 15 6 C 0.10 4.10 5.55 -21.27 -0.12 3.98 15 7 C -0.47 -18.52 8.26 24.95 0.21 -18.31 15 8 H 0.10 3.82 6.59 -2.91 -0.02 3.80 15 9 C 0.05 1.74 5.38 87.20 0.47 2.21 15 10 N -0.78 -31.19 11.21 23.21 0.26 -30.93 15 11 Si 0.98 29.35 29.66 68.60 2.03 31.39 15 12 H -0.26 -7.99 7.11 99.48 0.71 -7.28 15 13 H -0.27 -7.76 7.11 99.48 0.71 -7.05 15 14 H -0.25 -7.30 7.11 99.48 0.71 -6.59 15 15 C -0.14 -5.75 8.68 22.61 0.20 -5.55 15 16 C -0.08 -3.07 9.98 22.00 0.22 -2.85 15 17 C -0.21 -7.97 9.71 22.54 0.22 -7.75 15 18 C 0.04 1.60 6.48 36.11 0.23 1.83 15 19 N -0.01 -0.42 4.54 -47.11 -0.21 -0.64 15 20 O -0.23 -10.29 19.72 3.52 0.07 -10.22 15 21 O -0.16 -6.57 15.54 3.52 0.05 -6.51 15 22 H 0.12 3.48 6.51 -2.39 -0.02 3.46 15 23 H 0.13 3.35 7.59 -2.39 -0.02 3.34 15 24 H 0.08 2.96 6.98 -2.39 -0.02 2.95 15 25 H 0.05 1.92 6.36 -2.39 -0.02 1.91 15 26 H 0.30 10.90 8.27 -92.70 -0.77 10.13 15 27 H 0.12 4.99 6.48 -2.91 -0.02 4.97 15 28 H 0.14 4.18 8.06 -2.91 -0.02 4.16 15 29 H 0.12 4.40 8.04 -2.91 -0.02 4.38 15 Total: -1.00 -48.76 269.26 6.75 -42.01 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 1.20 Total: 18.16 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 2.97 Total: -25.60 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.42 Total: -49.23 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: 0.12 Total: -16.74 kcal Atomic # 14 Polarization: 29.35 SS G_CDS: 2.03 Total: 31.39 kcal Total: -48.76 6.75 -42.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396022371.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.252 kcal (2) G-P(sol) polarization free energy of solvation -48.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds