Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47383 * 69.44379 * 3 2 1 5 5 C 1.50697 * 109.47354 * 179.97438 * 4 3 2 6 6 C 1.38818 * 119.85388 * 270.02202 * 5 4 3 7 7 C 1.38774 * 120.59863 * 179.97438 * 6 5 4 8 8 C 1.36525 * 120.30084 * 359.78695 * 7 6 5 9 9 N 1.48006 * 120.15469 * 180.25222 * 8 7 6 10 10 O 1.31702 * 120.00191 * 354.30959 * 9 8 7 11 11 O 1.31698 * 119.99969 * 174.30371 * 9 8 7 12 12 C 1.41254 * 119.68781 * 0.44460 * 8 7 6 13 13 C 1.40348 * 120.28867 * 179.80743 * 12 8 7 14 14 H 1.07997 * 119.99851 * 325.60356 * 13 12 8 15 15 C 1.46540 * 120.00182 * 145.59705 * 13 12 8 16 16 N 1.29502 * 120.00465 * 168.30116 * 15 13 12 17 17 Si 1.86802 * 120.00084 * 348.30048 * 15 13 12 18 18 H 1.48504 * 109.46892 * 91.57484 * 17 15 13 19 19 H 1.48493 * 109.47746 * 211.57812 * 17 15 13 20 20 H 1.48505 * 109.46886 * 331.58404 * 17 15 13 21 21 C 1.36489 * 119.84740 * 89.99913 * 5 4 3 22 22 H 1.09001 * 109.47437 * 309.44006 * 3 2 1 23 23 H 1.09001 * 109.47023 * 189.44407 * 3 2 1 24 24 H 1.09001 * 109.47139 * 59.99445 * 4 3 2 25 25 H 1.09001 * 109.47064 * 300.00002 * 4 3 2 26 26 H 1.08000 * 119.69670 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.84631 * 180.02562 * 7 6 5 28 28 H 0.96996 * 120.00224 * 180.02562 * 16 15 13 29 29 H 1.07996 * 120.15646 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5056 -1.3506 5 6 4.6252 -0.5043 -1.3509 6 6 5.3152 0.6237 -1.7734 7 6 6.7029 0.6419 -1.7795 8 6 7.4079 -0.4511 -1.3645 9 7 8.8878 -0.4261 -1.3670 10 8 9.5281 0.6071 -1.8740 11 8 9.5643 -1.4370 -0.8621 12 6 6.7184 -1.6073 -0.9367 13 6 7.4306 -2.7394 -0.5114 14 1 8.3719 -2.9915 -0.9769 15 6 6.8971 -3.5792 0.5645 16 7 7.4258 -4.7366 0.8052 17 14 5.4544 -2.9803 1.5888 18 1 4.1848 -3.4479 0.9767 19 1 5.5677 -3.5206 2.9673 20 1 5.4636 -1.4960 1.6365 21 6 5.3055 -1.6122 -0.9351 22 1 2.9717 -0.6520 0.7936 23 1 2.9708 1.0146 0.1686 24 1 2.7546 0.1471 -2.1443 25 1 2.7554 -1.5195 -1.5193 26 1 4.7671 1.4952 -2.0997 27 1 7.2273 1.5262 -2.1103 28 1 7.0724 -5.2927 1.5171 29 1 4.7664 -2.4885 -0.6069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396022505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = 47.499353 kcal Electronic energy + Delta-G solvation = -16889.173236 eV Core-core repulsion = 13973.886905 eV Total energy + Delta-G solvation = -2915.286331 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.09100 -37.18297 -36.51781 -34.64171 -33.61615 -32.74463 -31.09568 -29.89248 -26.48365 -25.25384 -23.18761 -22.05970 -20.00514 -18.29884 -17.58635 -17.06621 -16.52406 -15.68898 -15.31671 -14.57131 -14.43921 -14.08145 -13.94535 -13.65033 -13.29781 -12.89431 -12.55458 -12.45970 -12.17424 -11.84300 -11.55425 -11.31828 -11.10127 -10.89615 -10.67846 -10.37692 -9.89524 -9.62472 -9.28400 -9.14792 -8.43454 -8.27872 -7.76237 -5.23107 0.78081 2.07041 2.37897 2.56561 2.67625 2.70932 2.76532 2.78696 2.96885 3.33331 3.73954 3.94077 4.56387 4.95138 5.15041 5.16638 5.44994 5.51035 5.65301 5.80740 5.87781 5.98447 6.14655 6.33618 6.50755 6.82344 6.87426 7.15015 7.27392 7.31449 7.47260 7.52876 7.91254 8.03634 8.57605 9.07278 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.009088 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.143872 B = 3080.177686 C = 4349.990187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.213 3.787 3 C -0.027 4.027 4 C -0.075 4.075 5 C -0.032 4.032 6 C -0.229 4.229 7 C -0.009 4.009 8 C -0.099 4.099 9 N 0.033 4.967 10 O -0.341 6.341 11 O -0.259 6.259 12 C 0.062 3.938 13 C -0.301 4.301 14 H 0.136 0.864 15 C 0.062 3.938 16 N -0.708 5.708 17 Si 0.916 3.084 18 H -0.252 1.252 19 H -0.274 1.274 20 H -0.229 1.229 21 C -0.188 4.188 22 H 0.108 0.892 23 H 0.115 0.885 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.309 0.691 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.031 2.106 1.709 9.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.104 4.104 3 C -0.067 4.067 4 C -0.114 4.114 5 C -0.033 4.033 6 C -0.251 4.251 7 C -0.029 4.029 8 C -0.199 4.199 9 N 0.459 4.541 10 O -0.489 6.489 11 O -0.425 6.425 12 C 0.057 3.943 13 C -0.327 4.327 14 H 0.154 0.846 15 C -0.172 4.172 16 N -0.327 5.327 17 Si 0.737 3.263 18 H -0.177 1.177 19 H -0.200 1.200 20 H -0.151 1.151 21 C -0.207 4.207 22 H 0.126 0.874 23 H 0.133 0.867 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.134 0.866 27 H 0.141 0.859 28 H 0.122 0.878 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.882 1.980 1.759 11.200 hybrid contribution 0.502 -0.039 0.410 0.649 sum -10.380 1.940 2.168 10.780 Atomic orbital electron populations 1.81204 1.13127 1.09354 1.08867 1.29348 0.95351 0.92772 0.92930 1.19382 0.80907 1.05708 1.00699 1.20510 0.92775 1.02707 0.95362 1.19135 0.93324 0.93793 0.97009 1.20297 0.92121 0.99016 1.13634 1.20273 0.94024 0.95874 0.92707 1.19743 0.75994 0.98454 1.25731 1.49835 1.04237 1.01063 0.98959 1.96087 1.72077 1.25133 1.55579 1.96106 1.69345 1.26043 1.51028 1.17108 0.91545 0.90906 0.94727 1.22264 1.05729 0.98047 1.06662 0.84637 1.28205 0.97928 0.93064 0.97999 1.68928 1.33519 1.07121 1.23106 0.86216 0.78987 0.83201 0.77856 1.17691 1.19955 1.15118 1.20829 0.92709 0.98568 1.08612 0.87378 0.86693 0.90045 0.90303 0.86581 0.85876 0.87806 0.86457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.35 18.54 42.15 0.78 -5.56 15 2 C 0.21 2.44 15.43 -20.76 -0.32 2.12 15 3 C -0.03 -0.26 5.68 -29.52 -0.17 -0.42 15 4 C -0.07 -0.82 5.29 -27.88 -0.15 -0.97 15 5 C -0.03 -0.48 5.10 -105.04 -0.54 -1.02 15 6 C -0.23 -3.64 9.71 -39.17 -0.38 -4.02 15 7 C -0.01 -0.18 9.52 -40.00 -0.38 -0.56 15 8 C -0.10 -2.29 6.90 -79.43 -0.55 -2.84 15 9 N 0.03 0.89 4.98 34.22 0.17 1.06 15 10 O -0.34 -9.24 19.15 -31.57 -0.60 -9.84 15 11 O -0.26 -7.24 16.25 -31.57 -0.51 -7.75 15 12 C 0.06 1.37 5.13 -106.80 -0.55 0.82 15 13 C -0.30 -7.04 8.46 -35.44 -0.30 -7.34 15 14 H 0.14 3.57 5.95 -52.49 -0.31 3.26 15 15 C 0.06 1.29 5.63 -15.19 -0.09 1.20 15 16 N -0.71 -14.88 13.89 55.98 0.78 -14.10 15 17 Si 0.92 15.35 24.63 -169.99 -4.19 11.16 15 18 H -0.25 -3.78 6.74 56.52 0.38 -3.39 15 19 H -0.27 -4.45 7.11 56.52 0.40 -4.05 15 20 H -0.23 -3.84 6.84 56.52 0.39 -3.46 15 21 C -0.19 -3.38 6.77 -39.05 -0.26 -3.65 15 22 H 0.11 0.99 8.14 -51.93 -0.42 0.56 15 23 H 0.12 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.08 0.78 8.08 -51.93 -0.42 0.36 15 25 H 0.08 0.83 8.08 -51.93 -0.42 0.41 15 26 H 0.12 1.47 8.06 -52.49 -0.42 1.05 15 27 H 0.12 2.31 7.56 -52.49 -0.40 1.91 15 28 H 0.31 5.54 8.27 -40.82 -0.34 5.20 15 29 H 0.12 1.94 4.88 -52.49 -0.26 1.69 15 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -28.19 268.93 -5.44 -33.63 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -2.24 Total: 4.03 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -3.68 Total: -16.67 kcal Atomic # 7 Polarization: -20.34 SS G_CDS: 1.73 Total: -18.61 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -1.12 Total: -17.59 kcal Atomic # 14 Polarization: 15.35 SS G_CDS: -4.19 Total: 11.16 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.19 -5.44 -33.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396022505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.133 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds