Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47383 * 69.44379 * 3 2 1 5 5 C 1.50697 * 109.47354 * 179.97438 * 4 3 2 6 6 C 1.38818 * 119.85388 * 270.02202 * 5 4 3 7 7 C 1.38774 * 120.59863 * 179.97438 * 6 5 4 8 8 C 1.36525 * 120.30084 * 359.78695 * 7 6 5 9 9 N 1.48006 * 120.15469 * 180.25222 * 8 7 6 10 10 O 1.31702 * 120.00191 * 354.30959 * 9 8 7 11 11 O 1.31698 * 119.99969 * 174.30371 * 9 8 7 12 12 C 1.41254 * 119.68781 * 0.44460 * 8 7 6 13 13 C 1.40348 * 120.28867 * 179.80743 * 12 8 7 14 14 H 1.07997 * 119.99851 * 325.60356 * 13 12 8 15 15 C 1.46540 * 120.00182 * 145.59705 * 13 12 8 16 16 N 1.29502 * 120.00465 * 168.30116 * 15 13 12 17 17 Si 1.86802 * 120.00084 * 348.30048 * 15 13 12 18 18 H 1.48504 * 109.46892 * 91.57484 * 17 15 13 19 19 H 1.48493 * 109.47746 * 211.57812 * 17 15 13 20 20 H 1.48505 * 109.46886 * 331.58404 * 17 15 13 21 21 C 1.36489 * 119.84740 * 89.99913 * 5 4 3 22 22 H 1.09001 * 109.47437 * 309.44006 * 3 2 1 23 23 H 1.09001 * 109.47023 * 189.44407 * 3 2 1 24 24 H 1.09001 * 109.47139 * 59.99445 * 4 3 2 25 25 H 1.09001 * 109.47064 * 300.00002 * 4 3 2 26 26 H 1.08000 * 119.69670 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.84631 * 180.02562 * 7 6 5 28 28 H 0.96996 * 120.00224 * 180.02562 * 16 15 13 29 29 H 1.07996 * 120.15646 * 0.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5056 -1.3506 5 6 4.6252 -0.5043 -1.3509 6 6 5.3152 0.6237 -1.7734 7 6 6.7029 0.6419 -1.7795 8 6 7.4079 -0.4511 -1.3645 9 7 8.8878 -0.4261 -1.3670 10 8 9.5281 0.6071 -1.8740 11 8 9.5643 -1.4370 -0.8621 12 6 6.7184 -1.6073 -0.9367 13 6 7.4306 -2.7394 -0.5114 14 1 8.3719 -2.9915 -0.9769 15 6 6.8971 -3.5792 0.5645 16 7 7.4258 -4.7366 0.8052 17 14 5.4544 -2.9803 1.5888 18 1 4.1848 -3.4479 0.9767 19 1 5.5677 -3.5206 2.9673 20 1 5.4636 -1.4960 1.6365 21 6 5.3055 -1.6122 -0.9351 22 1 2.9717 -0.6520 0.7936 23 1 2.9708 1.0146 0.1686 24 1 2.7546 0.1471 -2.1443 25 1 2.7554 -1.5195 -1.5193 26 1 4.7671 1.4952 -2.0997 27 1 7.2273 1.5262 -2.1103 28 1 7.0724 -5.2927 1.5171 29 1 4.7664 -2.4885 -0.6069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396022505.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = 29.753197 kcal Electronic energy + Delta-G solvation = -16889.942767 eV Core-core repulsion = 13973.886905 eV Total energy + Delta-G solvation = -2916.055862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61200 -38.53831 -37.67986 -36.26076 -34.83086 -34.49009 -32.71846 -31.16543 -28.12485 -26.67424 -24.52768 -23.59585 -21.48077 -19.96312 -18.65706 -18.39634 -18.20331 -17.21096 -16.35098 -16.07419 -15.83267 -15.43118 -15.38942 -14.71872 -14.60579 -14.14393 -13.88623 -13.55770 -13.38939 -13.16257 -12.89819 -12.51509 -12.31902 -12.20949 -11.78165 -11.62539 -11.43829 -11.30273 -11.16527 -10.98497 -9.95176 -9.82345 -9.41591 -7.00916 -1.07484 0.57915 0.82973 1.19413 1.34474 1.40325 1.53046 1.87234 1.92228 1.96993 2.24221 2.96154 3.13994 3.92713 4.07804 4.13135 4.32626 4.34960 4.48748 4.60262 4.71328 4.80805 4.93155 5.12725 5.28084 5.30599 5.38434 5.48166 5.69504 5.81855 5.87793 6.09918 6.33507 6.70095 6.78535 7.48958 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018913 B = 0.009088 C = 0.006435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.143872 B = 3080.177686 C = 4349.990187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.243 3.757 3 C -0.025 4.025 4 C -0.072 4.072 5 C -0.019 4.019 6 C -0.159 4.159 7 C -0.059 4.059 8 C -0.088 4.088 9 N 0.028 4.972 10 O -0.431 6.431 11 O -0.375 6.375 12 C 0.036 3.964 13 C -0.284 4.284 14 H 0.087 0.913 15 C 0.021 3.979 16 N -0.726 5.726 17 Si 0.962 3.038 18 H -0.201 1.201 19 H -0.263 1.263 20 H -0.224 1.224 21 C -0.177 4.177 22 H 0.123 0.877 23 H 0.140 0.860 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.169 0.831 27 H 0.122 0.878 28 H 0.330 0.670 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 2.164 2.795 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.073 4.073 3 C -0.065 4.065 4 C -0.110 4.110 5 C -0.020 4.020 6 C -0.180 4.180 7 C -0.078 4.078 8 C -0.197 4.197 9 N 0.415 4.585 10 O -0.555 6.555 11 O -0.511 6.511 12 C 0.031 3.969 13 C -0.313 4.313 14 H 0.105 0.895 15 C -0.210 4.210 16 N -0.347 5.347 17 Si 0.776 3.224 18 H -0.123 1.123 19 H -0.188 1.188 20 H -0.146 1.146 21 C -0.196 4.196 22 H 0.141 0.859 23 H 0.158 0.842 24 H 0.126 0.874 25 H 0.112 0.888 26 H 0.187 0.813 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.841 2.044 2.809 17.196 hybrid contribution 1.899 -0.332 0.133 1.932 sum -14.942 1.712 2.943 15.325 Atomic orbital electron populations 1.81270 1.14927 1.11302 1.10551 1.29555 0.95368 0.91069 0.91336 1.19528 0.79262 1.07610 1.00059 1.20576 0.88523 1.04751 0.97196 1.19594 0.96111 0.91964 0.94347 1.21080 0.90316 1.00292 1.06347 1.20518 0.95781 0.95236 0.96294 1.20522 0.74871 1.00233 1.24056 1.49948 1.05151 1.01130 1.02312 1.95976 1.73139 1.26691 1.59735 1.96021 1.70611 1.27957 1.56495 1.17462 0.93835 0.89845 0.95803 1.22527 1.04013 0.98792 1.05988 0.89475 1.29254 1.00900 0.92900 0.97947 1.68890 1.34026 1.08063 1.23714 0.85620 0.76881 0.83132 0.76806 1.12332 1.18802 1.14597 1.21115 0.90233 1.00659 1.07556 0.85940 0.84180 0.87417 0.88832 0.81340 0.86036 0.85616 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.87 18.54 20.01 0.37 -11.50 15 2 C 0.24 3.98 15.43 89.44 1.38 5.36 15 3 C -0.02 -0.26 5.68 28.79 0.16 -0.10 15 4 C -0.07 -0.94 5.29 29.85 0.16 -0.78 15 5 C -0.02 -0.44 5.10 -20.14 -0.10 -0.55 15 6 C -0.16 -4.03 9.71 22.54 0.22 -3.81 15 7 C -0.06 -2.23 9.52 22.00 0.21 -2.02 15 8 C -0.09 -4.20 6.90 36.72 0.25 -3.95 15 9 N 0.03 1.67 4.98 -45.66 -0.23 1.44 15 10 O -0.43 -26.52 19.15 3.51 0.07 -26.45 15 11 O -0.38 -24.07 16.25 3.52 0.06 -24.01 15 12 C 0.04 1.53 5.13 -21.27 -0.11 1.43 15 13 C -0.28 -13.71 8.46 24.95 0.21 -13.50 15 14 H 0.09 5.07 5.95 -2.91 -0.02 5.05 15 15 C 0.02 0.85 5.63 87.20 0.49 1.34 15 16 N -0.73 -29.99 13.89 23.21 0.32 -29.67 15 17 Si 0.96 26.59 24.63 68.60 1.69 28.28 15 18 H -0.20 -4.10 6.74 99.48 0.67 -3.43 15 19 H -0.26 -6.97 7.11 99.48 0.71 -6.26 15 20 H -0.22 -6.08 6.84 99.48 0.68 -5.40 15 21 C -0.18 -5.41 6.77 22.61 0.15 -5.26 15 22 H 0.12 1.10 8.14 -2.39 -0.02 1.08 15 23 H 0.14 0.91 8.14 -2.39 -0.02 0.89 15 24 H 0.11 1.01 8.08 -2.39 -0.02 0.99 15 25 H 0.09 1.11 8.08 -2.39 -0.02 1.09 15 26 H 0.17 2.72 8.06 -2.91 -0.02 2.70 15 27 H 0.12 4.63 7.56 -2.91 -0.02 4.61 15 28 H 0.33 11.15 8.27 -92.71 -0.77 10.38 15 29 H 0.14 3.69 4.88 -2.91 -0.01 3.67 15 Total: -1.00 -74.83 268.93 6.44 -68.39 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: 1.14 Total: 15.36 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.03 Total: -21.83 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.47 Total: -39.73 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: 0.12 Total: -50.47 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: 1.69 Total: 28.28 kcal Total: -74.83 6.44 -68.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396022505.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.139 kcal (2) G-P(sol) polarization free energy of solvation -74.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds