Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46887 * 286.09050 * 3 2 1 5 5 C 1.50703 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.38816 * 119.70317 * 98.97177 * 5 4 3 7 7 C 1.36478 * 120.30271 * 180.27500 * 6 5 4 8 8 C 1.41303 * 119.68614 * 359.44179 * 7 6 5 9 9 C 1.40350 * 120.28643 * 180.31680 * 8 7 6 10 10 H 1.07995 * 119.99506 * 204.29961 * 9 8 7 11 11 C 1.46540 * 119.99970 * 24.30303 * 9 8 7 12 12 N 1.29503 * 120.00597 * 15.32747 * 11 9 8 13 13 Si 1.86801 * 119.99629 * 195.32568 * 11 9 8 14 14 H 1.48498 * 109.47361 * 60.00055 * 13 11 9 15 15 H 1.48503 * 109.46920 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47259 * 299.99894 * 13 11 9 17 17 C 1.41251 * 119.42198 * 0.57793 * 8 7 6 18 18 C 1.36528 * 119.68970 * 359.71231 * 17 8 7 19 19 N 1.48006 * 119.85007 * 179.97438 * 18 17 8 20 20 O 1.31702 * 119.99949 * 5.72768 * 19 18 17 21 21 O 1.31700 * 120.00257 * 185.72181 * 19 18 17 22 22 H 1.09003 * 109.47117 * 166.09328 * 3 2 1 23 23 H 1.08998 * 109.47237 * 46.09559 * 3 2 1 24 24 H 1.09003 * 109.47015 * 60.00215 * 4 3 2 25 25 H 1.08994 * 109.47115 * 300.00200 * 4 3 2 26 26 H 1.08003 * 119.84705 * 0.02562 * 6 5 4 27 27 H 1.07995 * 120.15882 * 179.72430 * 7 6 5 28 28 H 0.96993 * 120.00470 * 180.02562 * 12 11 9 29 29 H 1.07993 * 120.15786 * 179.73741 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3989 1.3860 5 6 4.6252 -0.3976 1.3862 6 6 5.3120 0.6951 1.8972 7 6 6.6767 0.7116 1.8983 8 6 7.3903 -0.3955 1.3868 9 6 8.7938 -0.3947 1.3879 10 1 9.3346 -1.0067 0.6812 11 6 9.5253 0.4364 2.3478 12 7 8.9114 0.9331 3.3743 13 14 11.3435 0.7795 2.0910 14 1 11.5376 1.4749 0.7933 15 1 11.8457 1.6384 3.1934 16 1 12.0928 -0.5026 2.0824 17 6 6.6789 -1.5007 0.8695 18 6 5.3137 -1.4887 0.8750 19 7 4.5647 -2.6446 0.3332 20 8 5.2102 -3.7272 -0.0484 21 8 3.2526 -2.5906 0.2329 22 1 2.9709 0.9984 -0.2470 23 1 2.9717 -0.7118 -0.7404 24 1 2.7552 -1.3967 1.6330 25 1 2.7545 0.3136 2.1264 26 1 4.7639 1.5378 2.2920 27 1 7.2087 1.5649 2.2923 28 1 9.3955 1.4835 4.0094 29 1 7.2123 -2.3513 0.4717 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396023688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = 54.272195 kcal Electronic energy + Delta-G solvation = -16803.674260 eV Core-core repulsion = 13888.681621 eV Total energy + Delta-G solvation = -2914.992639 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.32133 -37.30232 -36.53879 -34.66291 -33.84041 -32.72384 -30.63675 -30.02124 -26.22008 -25.72751 -23.02034 -21.42441 -20.61877 -18.53274 -17.27225 -17.25375 -16.29869 -15.71589 -15.17775 -15.07110 -14.74111 -13.86880 -13.65144 -13.39437 -12.92576 -12.50537 -12.35191 -12.11812 -11.73781 -11.59317 -11.43351 -11.10769 -10.91218 -10.84511 -10.71582 -10.46847 -10.11195 -10.01222 -9.77723 -9.57946 -8.43553 -8.11885 -7.44095 -4.89615 0.22780 2.08582 2.17990 2.45222 2.75025 2.75886 2.79837 3.07724 3.09212 3.47946 3.92388 4.34968 4.92629 5.29372 5.52323 5.58620 5.65444 5.86658 6.07359 6.10694 6.21001 6.30370 6.40299 6.42184 6.55875 6.89824 6.99182 7.26195 7.37093 7.48745 7.69502 7.85783 7.91114 8.12079 8.27435 9.44820 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.005885 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.104125 B = 4756.473547 C = 5408.606415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.225 3.775 3 C -0.018 4.018 4 C -0.062 4.062 5 C -0.175 4.175 6 C -0.084 4.084 7 C -0.134 4.134 8 C 0.103 3.897 9 C -0.440 4.440 10 H 0.093 0.907 11 C 0.073 3.927 12 N -0.749 5.749 13 Si 0.926 3.074 14 H -0.256 1.256 15 H -0.273 1.273 16 H -0.257 1.257 17 C -0.180 4.180 18 C 0.054 3.946 19 N -0.003 5.003 20 O -0.214 6.214 21 O -0.204 6.204 22 H 0.102 0.898 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.297 0.703 29 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 3.716 -0.621 4.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.092 4.092 3 C -0.059 4.059 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.103 4.103 7 C -0.154 4.154 8 C 0.099 3.901 9 C -0.465 4.465 10 H 0.111 0.889 11 C -0.155 4.155 12 N -0.369 5.369 13 Si 0.748 3.252 14 H -0.180 1.180 15 H -0.197 1.197 16 H -0.181 1.181 17 C -0.201 4.201 18 C -0.032 4.032 19 N 0.466 4.534 20 O -0.401 6.401 21 O -0.393 6.393 22 H 0.120 0.880 23 H 0.126 0.874 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.132 0.868 27 H 0.151 0.849 28 H 0.110 0.890 29 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.249 4.305 -0.178 4.316 hybrid contribution 1.056 -0.262 -0.082 1.091 sum 1.305 4.043 -0.260 4.256 Atomic orbital electron populations 1.81137 1.13217 1.10114 1.09434 1.29345 0.95332 0.92056 0.92448 1.19373 0.80939 1.04298 1.01247 1.20490 0.91693 1.03601 0.94321 1.18802 0.94134 0.94799 1.10075 1.20333 0.94579 0.95926 0.99496 1.21592 0.92689 0.98893 1.02200 1.17440 0.93525 0.89063 0.90026 1.20850 0.90627 1.21049 1.14017 0.88882 1.27563 1.02426 0.92498 0.93010 1.69043 1.40587 1.20190 1.07117 0.86048 0.79350 0.80009 0.79771 1.17968 1.19749 1.18133 1.20766 0.89935 1.00290 1.09149 1.19793 0.91161 0.85065 1.07227 1.50932 1.02519 1.03564 0.96401 1.96205 1.69456 1.19913 1.54535 1.96088 0.91278 1.90708 1.61185 0.88000 0.87411 0.89000 0.91491 0.86820 0.84881 0.88996 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.07 18.54 42.15 0.78 -7.28 15 2 C 0.23 3.46 15.43 -20.76 -0.32 3.14 15 3 C -0.02 -0.26 5.08 -29.52 -0.15 -0.41 15 4 C -0.06 -0.98 4.55 -27.88 -0.13 -1.11 15 5 C -0.17 -3.21 5.17 -104.21 -0.54 -3.75 15 6 C -0.08 -1.53 9.59 -40.00 -0.38 -1.91 15 7 C -0.13 -2.74 8.73 -39.05 -0.34 -3.09 15 8 C 0.10 2.27 5.62 -106.79 -0.60 1.67 15 9 C -0.44 -9.55 9.32 -35.44 -0.33 -9.88 15 10 H 0.09 1.94 7.98 -52.49 -0.42 1.52 15 11 C 0.07 1.46 5.36 -15.19 -0.08 1.38 15 12 N -0.75 -15.35 10.94 55.98 0.61 -14.74 15 13 Si 0.93 14.99 29.67 -169.99 -5.04 9.95 15 14 H -0.26 -4.14 7.11 56.52 0.40 -3.73 15 15 H -0.27 -4.29 7.11 56.52 0.40 -3.89 15 16 H -0.26 -4.21 7.11 56.52 0.40 -3.81 15 17 C -0.18 -3.90 9.30 -39.05 -0.36 -4.27 15 18 C 0.05 1.11 6.82 -80.37 -0.55 0.56 15 19 N 0.00 -0.07 4.98 33.76 0.17 0.10 15 20 O -0.21 -4.76 19.13 -31.57 -0.60 -5.36 15 21 O -0.20 -4.10 13.87 -31.57 -0.44 -4.54 15 22 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.11 1.62 6.47 -51.93 -0.34 1.28 15 24 H 0.09 1.58 5.87 -51.93 -0.30 1.28 15 25 H 0.07 0.93 8.00 -51.93 -0.42 0.51 15 26 H 0.11 1.73 8.03 -52.48 -0.42 1.31 15 27 H 0.13 2.75 6.09 -52.49 -0.32 2.43 15 28 H 0.30 5.41 8.27 -40.82 -0.34 5.07 15 29 H 0.12 2.67 7.55 -52.49 -0.40 2.28 15 LS Contribution 269.83 15.07 4.07 4.07 Total: -1.00 -24.06 269.83 -6.41 -30.46 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -2.17 Total: 5.00 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -3.78 Total: -17.65 kcal Atomic # 7 Polarization: -23.49 SS G_CDS: 1.56 Total: -21.93 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.04 Total: -9.91 kcal Atomic # 14 Polarization: 14.99 SS G_CDS: -5.04 Total: 9.95 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -24.06 -6.41 -30.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396023688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.737 kcal (2) G-P(sol) polarization free energy of solvation -24.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds