Wall clock time and date at job start Mon Mar 30 2020 06:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46887 * 286.09050 * 3 2 1 5 5 C 1.50703 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.38816 * 119.70317 * 98.97177 * 5 4 3 7 7 C 1.36478 * 120.30271 * 180.27500 * 6 5 4 8 8 C 1.41303 * 119.68614 * 359.44179 * 7 6 5 9 9 C 1.40350 * 120.28643 * 180.31680 * 8 7 6 10 10 H 1.07995 * 119.99506 * 204.29961 * 9 8 7 11 11 C 1.46540 * 119.99970 * 24.30303 * 9 8 7 12 12 N 1.29503 * 120.00597 * 15.32747 * 11 9 8 13 13 Si 1.86801 * 119.99629 * 195.32568 * 11 9 8 14 14 H 1.48498 * 109.47361 * 60.00055 * 13 11 9 15 15 H 1.48503 * 109.46920 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47259 * 299.99894 * 13 11 9 17 17 C 1.41251 * 119.42198 * 0.57793 * 8 7 6 18 18 C 1.36528 * 119.68970 * 359.71231 * 17 8 7 19 19 N 1.48006 * 119.85007 * 179.97438 * 18 17 8 20 20 O 1.31702 * 119.99949 * 5.72768 * 19 18 17 21 21 O 1.31700 * 120.00257 * 185.72181 * 19 18 17 22 22 H 1.09003 * 109.47117 * 166.09328 * 3 2 1 23 23 H 1.08998 * 109.47237 * 46.09559 * 3 2 1 24 24 H 1.09003 * 109.47015 * 60.00215 * 4 3 2 25 25 H 1.08994 * 109.47115 * 300.00200 * 4 3 2 26 26 H 1.08003 * 119.84705 * 0.02562 * 6 5 4 27 27 H 1.07995 * 120.15882 * 179.72430 * 7 6 5 28 28 H 0.96993 * 120.00470 * 180.02562 * 12 11 9 29 29 H 1.07993 * 120.15786 * 179.73741 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.3989 1.3860 5 6 4.6252 -0.3976 1.3862 6 6 5.3120 0.6951 1.8972 7 6 6.6767 0.7116 1.8983 8 6 7.3903 -0.3955 1.3868 9 6 8.7938 -0.3947 1.3879 10 1 9.3346 -1.0067 0.6812 11 6 9.5253 0.4364 2.3478 12 7 8.9114 0.9331 3.3743 13 14 11.3435 0.7795 2.0910 14 1 11.5376 1.4749 0.7933 15 1 11.8457 1.6384 3.1934 16 1 12.0928 -0.5026 2.0824 17 6 6.6789 -1.5007 0.8695 18 6 5.3137 -1.4887 0.8750 19 7 4.5647 -2.6446 0.3332 20 8 5.2102 -3.7272 -0.0484 21 8 3.2526 -2.5906 0.2329 22 1 2.9709 0.9984 -0.2470 23 1 2.9717 -0.7118 -0.7404 24 1 2.7552 -1.3967 1.6330 25 1 2.7545 0.3136 2.1264 26 1 4.7639 1.5378 2.2920 27 1 7.2087 1.5649 2.2923 28 1 9.3955 1.4835 4.0094 29 1 7.2123 -2.3513 0.4717 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396023688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:22 Heat of formation + Delta-G solvation = 44.054136 kcal Electronic energy + Delta-G solvation = -16804.117348 eV Core-core repulsion = 13888.681621 eV Total energy + Delta-G solvation = -2915.435727 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.91684 -38.93337 -37.83118 -36.15095 -35.46800 -34.18816 -32.23192 -31.48832 -27.69313 -27.36812 -24.45222 -23.01039 -22.15424 -20.12855 -18.92399 -18.49905 -17.91235 -17.19080 -16.82266 -16.40107 -16.20277 -15.33397 -15.06233 -14.74367 -14.32519 -13.85099 -13.74216 -13.61132 -13.16535 -12.96189 -12.93487 -12.46280 -12.40877 -12.19101 -12.11949 -12.05357 -11.67120 -11.63797 -11.25440 -11.08948 -10.02568 -9.69162 -8.94368 -6.52310 -1.44212 0.44638 0.65765 0.82795 1.41251 1.47835 1.52231 1.84648 1.88996 2.14092 2.41844 3.11880 3.33116 3.90643 4.13195 4.30510 4.36955 4.44957 4.59106 4.67713 4.72997 4.84632 4.90608 5.07753 5.14564 5.33600 5.47771 5.67862 5.76602 5.90947 6.07332 6.32594 6.52041 6.65953 6.67723 7.97679 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033321 B = 0.005885 C = 0.005176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.104125 B = 4756.473547 C = 5408.606415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.247 3.753 3 C -0.011 4.011 4 C -0.063 4.063 5 C -0.148 4.148 6 C -0.078 4.078 7 C -0.135 4.135 8 C 0.084 3.916 9 C -0.478 4.478 10 H 0.085 0.915 11 C 0.045 3.955 12 N -0.772 5.772 13 Si 0.991 3.009 14 H -0.255 1.255 15 H -0.259 1.259 16 H -0.262 1.262 17 C -0.212 4.212 18 C 0.041 3.959 19 N -0.003 5.003 20 O -0.276 6.276 21 O -0.162 6.162 22 H 0.137 0.863 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.157 0.843 27 H 0.133 0.867 28 H 0.308 0.692 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 5.867 0.045 5.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.069 4.069 3 C -0.051 4.051 4 C -0.101 4.101 5 C -0.152 4.152 6 C -0.097 4.097 7 C -0.155 4.155 8 C 0.080 3.920 9 C -0.504 4.504 10 H 0.104 0.896 11 C -0.181 4.181 12 N -0.393 5.393 13 Si 0.810 3.190 14 H -0.178 1.178 15 H -0.183 1.183 16 H -0.187 1.187 17 C -0.233 4.233 18 C -0.046 4.046 19 N 0.463 4.537 20 O -0.447 6.447 21 O -0.363 6.363 22 H 0.155 0.845 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.174 0.826 27 H 0.150 0.850 28 H 0.121 0.879 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.327 6.352 0.462 6.377 hybrid contribution 1.052 -0.819 -0.230 1.353 sum 0.724 5.533 0.232 5.585 Atomic orbital electron populations 1.81180 1.14383 1.11485 1.10524 1.29412 0.95241 0.90861 0.91361 1.19364 0.79895 1.06038 0.99762 1.20543 0.89303 1.03970 0.96309 1.19228 0.95765 0.93299 1.06894 1.20734 0.93773 0.96841 0.98359 1.21736 0.93926 0.98252 1.01565 1.17709 0.94070 0.89648 0.90543 1.21068 0.91154 1.22835 1.15343 0.89638 1.28220 1.05921 0.91698 0.92215 1.69018 1.42277 1.20466 1.07525 0.85101 0.74394 0.79588 0.79932 1.17847 1.18310 1.18674 1.20664 0.90706 1.00346 1.11630 1.20045 0.91103 0.85598 1.07820 1.51013 1.02445 1.03746 0.96456 1.96224 1.69633 1.20868 1.57977 1.96048 0.91407 1.90410 1.58457 0.84523 0.88296 0.90300 0.88283 0.82555 0.84975 0.87851 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.12 18.54 20.01 0.37 -15.75 15 2 C 0.25 6.77 15.43 89.44 1.38 8.15 15 3 C -0.01 -0.25 5.08 28.79 0.15 -0.11 15 4 C -0.06 -1.71 4.55 29.85 0.14 -1.57 15 5 C -0.15 -5.04 5.17 -19.60 -0.10 -5.14 15 6 C -0.08 -2.57 9.59 22.00 0.21 -2.36 15 7 C -0.13 -5.36 8.73 22.61 0.20 -5.16 15 8 C 0.08 3.75 5.62 -21.27 -0.12 3.63 15 9 C -0.48 -21.43 9.32 24.95 0.23 -21.20 15 10 H 0.09 3.78 7.98 -2.91 -0.02 3.76 15 11 C 0.05 1.80 5.36 87.20 0.47 2.27 15 12 N -0.77 -31.11 10.94 23.21 0.25 -30.85 15 13 Si 0.99 30.21 29.67 68.60 2.04 32.24 15 14 H -0.25 -7.66 7.11 99.48 0.71 -6.95 15 15 H -0.26 -7.28 7.11 99.48 0.71 -6.57 15 16 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 17 C -0.21 -9.54 9.30 22.61 0.21 -9.33 15 18 C 0.04 1.68 6.82 36.11 0.25 1.93 15 19 N 0.00 -0.13 4.98 -47.12 -0.23 -0.37 15 20 O -0.28 -12.90 19.13 3.51 0.07 -12.84 15 21 O -0.16 -6.23 13.87 3.51 0.05 -6.19 15 22 H 0.14 2.42 8.14 -2.39 -0.02 2.41 15 23 H 0.10 2.64 6.47 -2.39 -0.02 2.63 15 24 H 0.08 2.44 5.87 -2.39 -0.01 2.43 15 25 H 0.10 2.16 8.00 -2.39 -0.02 2.14 15 26 H 0.16 3.85 8.03 -2.91 -0.02 3.83 15 27 H 0.13 5.28 6.09 -2.91 -0.02 5.26 15 28 H 0.31 10.85 8.27 -92.71 -0.77 10.08 15 29 H 0.11 5.03 7.55 -2.91 -0.02 5.01 15 Total: -1.00 -52.81 269.83 6.75 -46.07 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 1.20 Total: 16.58 kcal Atomic # 6 Polarization: -31.90 SS G_CDS: 3.01 Total: -28.89 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.39 Total: -46.97 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.12 Total: -19.02 kcal Atomic # 14 Polarization: 30.21 SS G_CDS: 2.04 Total: 32.24 kcal Total: -52.81 6.75 -46.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396023688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.120 kcal (2) G-P(sol) polarization free energy of solvation -52.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds