Wall clock time and date at job start Mon Mar 30 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46912 * 212.05434 * 3 2 1 5 5 C 1.50704 * 109.47092 * 180.02562 * 4 3 2 6 6 C 1.38811 * 119.69897 * 90.00269 * 5 4 3 7 7 C 1.36492 * 120.29645 * 180.02562 * 6 5 4 8 8 C 1.41286 * 119.69294 * 359.97190 * 7 6 5 9 9 C 1.40342 * 120.29545 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00146 * 219.62965 * 9 8 7 11 11 C 1.46548 * 119.99804 * 39.61699 * 9 8 7 12 12 N 1.29501 * 119.99860 * 16.64142 * 11 9 8 13 13 Si 1.86800 * 120.00023 * 196.63835 * 11 9 8 14 14 H 1.48498 * 109.47139 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47064 * 300.00140 * 13 11 9 16 16 H 1.48499 * 109.47227 * 60.00148 * 13 11 9 17 17 C 1.41268 * 119.41829 * 0.28031 * 8 7 6 18 18 N 1.48008 * 120.15399 * 179.72449 * 17 8 7 19 19 O 1.31699 * 119.99792 * 182.20875 * 18 17 8 20 20 O 1.31708 * 120.00184 * 2.20660 * 18 17 8 21 21 C 1.36519 * 119.68896 * 359.43643 * 17 8 7 22 22 H 1.08995 * 109.47061 * 92.05791 * 3 2 1 23 23 H 1.08994 * 109.47570 * 332.05170 * 3 2 1 24 24 H 1.09002 * 109.47324 * 60.00162 * 4 3 2 25 25 H 1.08999 * 109.47451 * 300.00002 * 4 3 2 26 26 H 1.07995 * 119.85590 * 359.97438 * 6 5 4 27 27 H 1.07997 * 120.15368 * 179.97438 * 7 6 5 28 28 H 0.97004 * 120.00060 * 6.61455 * 12 11 9 29 29 H 1.08001 * 119.85495 * 180.25429 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2235 0.7656 5 6 4.6244 1.2245 0.7651 6 6 5.3113 1.8652 -0.2570 7 6 6.6762 1.8732 -0.2698 8 6 7.3896 1.2261 0.7639 9 6 8.7930 1.2270 0.7635 10 1 9.3337 0.3394 1.0571 11 6 9.5248 2.4323 0.3644 12 7 8.9172 3.5752 0.3243 13 14 11.3341 2.3201 -0.0865 14 1 11.8381 3.6687 -0.4506 15 1 12.1022 1.8018 1.0739 16 1 11.5006 1.4007 -1.2407 17 6 6.6779 0.5734 1.7949 18 7 7.4088 -0.1148 2.8825 19 8 6.7429 -0.7592 3.8183 20 8 8.7251 -0.0829 2.9143 21 6 5.3128 0.5855 1.7867 22 1 2.9713 0.0377 -1.0270 23 1 2.9718 -0.9069 0.4816 24 1 2.7541 1.1865 1.7926 25 1 2.7536 2.1312 0.2840 26 1 4.7635 2.3587 -1.0460 27 1 7.2083 2.3720 -1.0663 28 1 8.0064 3.6519 0.6492 29 1 4.7660 0.0909 2.5759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396023752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:00 Heat of formation + Delta-G solvation = 35.702853 kcal Electronic energy + Delta-G solvation = -16704.470125 eV Core-core repulsion = 13788.672259 eV Total energy + Delta-G solvation = -2915.797866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.06917 -37.08318 -36.52750 -35.06873 -33.12024 -32.70904 -30.58355 -29.81490 -26.56071 -25.06088 -23.38020 -21.39569 -20.41229 -18.88523 -17.50954 -16.67296 -16.26358 -15.36440 -15.31752 -14.65522 -14.38847 -14.19353 -13.95891 -13.49314 -13.16366 -12.96913 -12.40589 -12.26811 -11.99356 -11.62690 -11.32094 -11.16753 -10.96152 -10.79131 -10.64278 -10.33595 -9.80437 -9.66365 -9.32305 -9.24071 -8.59582 -8.33015 -7.88506 -5.24128 0.80046 2.05068 2.52196 2.75884 2.78739 2.83841 2.91875 2.93080 3.07471 3.50053 3.82483 4.04420 4.55262 5.06656 5.28616 5.32560 5.53854 5.60312 5.70329 5.84478 6.05097 6.16139 6.19676 6.53175 6.63157 6.74606 6.99828 7.08145 7.20141 7.33240 7.49212 7.55614 7.87380 7.95686 8.53949 9.11990 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.006335 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.588412 B = 4418.836216 C = 5269.683080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.214 3.786 3 C -0.027 4.027 4 C -0.050 4.050 5 C -0.202 4.202 6 C -0.066 4.066 7 C -0.167 4.167 8 C 0.064 3.936 9 C -0.369 4.369 10 H 0.125 0.875 11 C 0.022 3.978 12 N -0.719 5.719 13 Si 1.080 2.920 14 H -0.266 1.266 15 H -0.259 1.259 16 H -0.264 1.264 17 C -0.098 4.098 18 N 0.035 4.965 19 O -0.345 6.345 20 O -0.266 6.266 21 C -0.010 4.010 22 H 0.109 0.891 23 H 0.109 0.891 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.310 0.690 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 1.073 -6.077 6.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.104 4.104 3 C -0.067 4.067 4 C -0.089 4.089 5 C -0.205 4.205 6 C -0.084 4.084 7 C -0.186 4.186 8 C 0.059 3.941 9 C -0.397 4.397 10 H 0.142 0.858 11 C -0.209 4.209 12 N -0.338 5.338 13 Si 0.899 3.101 14 H -0.190 1.190 15 H -0.183 1.183 16 H -0.189 1.189 17 C -0.199 4.199 18 N 0.459 4.541 19 O -0.491 6.491 20 O -0.430 6.430 21 C -0.030 4.030 22 H 0.127 0.873 23 H 0.127 0.873 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.125 0.875 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.398 2.054 -6.722 7.426 hybrid contribution -0.853 -1.056 0.925 1.642 sum -3.250 0.999 -5.797 6.720 Atomic orbital electron populations 1.81191 1.13283 1.09228 1.09452 1.29506 0.95515 0.92702 0.92636 1.19511 0.80497 1.02227 1.04470 1.20157 0.92337 0.95998 1.00358 1.18908 0.93338 1.09325 0.98978 1.20520 0.94107 0.96955 0.96860 1.21065 0.93634 1.05293 0.98649 1.17294 0.93767 0.92909 0.90178 1.23355 0.91876 1.00494 1.23968 0.85787 1.29369 1.09234 0.90757 0.91564 1.69975 1.16269 1.26674 1.20923 0.83428 0.69693 0.78157 0.78868 1.19018 1.18328 1.18863 1.19835 0.90807 1.16615 0.92646 1.49779 1.02240 0.99933 1.02139 1.96088 1.68382 1.49590 1.35015 1.96075 0.90226 1.69670 1.87078 1.20124 0.91584 0.94486 0.96773 0.87283 0.87291 0.91077 0.90952 0.87074 0.86367 0.87469 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.76 18.54 42.15 0.78 -5.98 15 2 C 0.21 2.59 15.43 -20.76 -0.32 2.27 15 3 C -0.03 -0.27 5.68 -29.52 -0.17 -0.44 15 4 C -0.05 -0.59 5.29 -27.88 -0.15 -0.73 15 5 C -0.20 -3.20 5.17 -104.21 -0.54 -3.73 15 6 C -0.07 -1.05 9.62 -40.00 -0.38 -1.44 15 7 C -0.17 -3.17 7.98 -39.05 -0.31 -3.49 15 8 C 0.06 1.42 5.09 -106.80 -0.54 0.88 15 9 C -0.37 -8.39 7.69 -35.44 -0.27 -8.66 15 10 H 0.12 2.96 6.07 -52.49 -0.32 2.64 15 11 C 0.02 0.45 5.26 -15.19 -0.08 0.37 15 12 N -0.72 -15.14 12.75 55.99 0.71 -14.43 15 13 Si 1.08 17.50 30.06 -169.99 -5.11 12.39 15 14 H -0.27 -4.22 7.11 56.52 0.40 -3.81 15 15 H -0.26 -4.22 7.11 56.52 0.40 -3.81 15 16 H -0.26 -4.00 7.11 56.52 0.40 -3.60 15 17 C -0.10 -2.29 6.91 -79.42 -0.55 -2.84 15 18 N 0.03 0.92 4.98 34.22 0.17 1.10 15 19 O -0.34 -9.33 19.14 -31.57 -0.60 -9.94 15 20 O -0.27 -7.28 16.29 -31.57 -0.51 -7.79 15 21 C -0.01 -0.20 9.17 -40.00 -0.37 -0.57 15 22 H 0.11 0.92 8.14 -51.93 -0.42 0.50 15 23 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 24 H 0.07 0.83 8.08 -51.93 -0.42 0.41 15 25 H 0.07 0.77 8.08 -51.93 -0.42 0.35 15 26 H 0.11 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.12 2.19 7.33 -52.49 -0.38 1.80 15 28 H 0.31 6.65 6.80 -40.82 -0.28 6.38 15 29 H 0.12 2.30 7.55 -52.49 -0.40 1.90 15 LS Contribution 274.64 15.07 4.14 4.14 Total: -1.00 -28.13 274.64 -6.39 -34.52 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -2.28 Total: 4.38 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.68 Total: -18.38 kcal Atomic # 7 Polarization: -20.98 SS G_CDS: 1.67 Total: -19.31 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.12 Total: -17.73 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.11 Total: 12.39 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -28.13 -6.39 -34.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396023752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.220 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds