Wall clock time and date at job start Mon Mar 30 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53001 * 109.46912 * 212.05434 * 3 2 1 5 5 C 1.50704 * 109.47092 * 180.02562 * 4 3 2 6 6 C 1.38811 * 119.69897 * 90.00269 * 5 4 3 7 7 C 1.36492 * 120.29645 * 180.02562 * 6 5 4 8 8 C 1.41286 * 119.69294 * 359.97190 * 7 6 5 9 9 C 1.40342 * 120.29545 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00146 * 219.62965 * 9 8 7 11 11 C 1.46548 * 119.99804 * 39.61699 * 9 8 7 12 12 N 1.29501 * 119.99860 * 16.64142 * 11 9 8 13 13 Si 1.86800 * 120.00023 * 196.63835 * 11 9 8 14 14 H 1.48498 * 109.47139 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.47064 * 300.00140 * 13 11 9 16 16 H 1.48499 * 109.47227 * 60.00148 * 13 11 9 17 17 C 1.41268 * 119.41829 * 0.28031 * 8 7 6 18 18 N 1.48008 * 120.15399 * 179.72449 * 17 8 7 19 19 O 1.31699 * 119.99792 * 182.20875 * 18 17 8 20 20 O 1.31708 * 120.00184 * 2.20660 * 18 17 8 21 21 C 1.36519 * 119.68896 * 359.43643 * 17 8 7 22 22 H 1.08995 * 109.47061 * 92.05791 * 3 2 1 23 23 H 1.08994 * 109.47570 * 332.05170 * 3 2 1 24 24 H 1.09002 * 109.47324 * 60.00162 * 4 3 2 25 25 H 1.08999 * 109.47451 * 300.00002 * 4 3 2 26 26 H 1.07995 * 119.85590 * 359.97438 * 6 5 4 27 27 H 1.07997 * 120.15368 * 179.97438 * 7 6 5 28 28 H 0.97004 * 120.00060 * 6.61455 * 12 11 9 29 29 H 1.08001 * 119.85495 * 180.25429 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2235 0.7656 5 6 4.6244 1.2245 0.7651 6 6 5.3113 1.8652 -0.2570 7 6 6.6762 1.8732 -0.2698 8 6 7.3896 1.2261 0.7639 9 6 8.7930 1.2270 0.7635 10 1 9.3337 0.3394 1.0571 11 6 9.5248 2.4323 0.3644 12 7 8.9172 3.5752 0.3243 13 14 11.3341 2.3201 -0.0865 14 1 11.8381 3.6687 -0.4506 15 1 12.1022 1.8018 1.0739 16 1 11.5006 1.4007 -1.2407 17 6 6.6779 0.5734 1.7949 18 7 7.4088 -0.1148 2.8825 19 8 6.7429 -0.7592 3.8183 20 8 8.7251 -0.0829 2.9143 21 6 5.3128 0.5855 1.7867 22 1 2.9713 0.0377 -1.0270 23 1 2.9718 -0.9069 0.4816 24 1 2.7541 1.1865 1.7926 25 1 2.7536 2.1312 0.2840 26 1 4.7635 2.3587 -1.0460 27 1 7.2083 2.3720 -1.0663 28 1 8.0064 3.6519 0.6492 29 1 4.7660 0.0909 2.5759 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396023752.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:00 Heat of formation + Delta-G solvation = 20.244567 kcal Electronic energy + Delta-G solvation = -16705.140446 eV Core-core repulsion = 13788.672259 eV Total energy + Delta-G solvation = -2916.468187 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64755 -38.50297 -37.81527 -36.64342 -34.50710 -34.39838 -32.13156 -31.28557 -28.14427 -26.64871 -24.79333 -22.95442 -21.91079 -20.55918 -18.50416 -18.32350 -17.86423 -16.93484 -16.64616 -16.17666 -15.79380 -15.55793 -15.24785 -14.80961 -14.64386 -14.27259 -13.69337 -13.47925 -13.25426 -12.97545 -12.67438 -12.43648 -12.32927 -12.07957 -11.82872 -11.66973 -11.47735 -11.34393 -11.20260 -11.06937 -10.18316 -9.99640 -9.56150 -7.01317 -1.07854 0.51872 0.88126 1.27973 1.48095 1.53570 1.82200 1.83276 1.86152 2.11979 2.30589 2.90868 3.12319 3.93043 4.10262 4.19148 4.33386 4.40599 4.48907 4.58323 4.76232 4.80935 4.95451 5.08333 5.19072 5.24920 5.28220 5.45561 5.66952 5.79782 5.81495 6.04932 6.29651 6.64067 6.75510 7.35325 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026620 B = 0.006335 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.588412 B = 4418.836216 C = 5269.683080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.242 3.758 3 C -0.019 4.019 4 C -0.053 4.053 5 C -0.132 4.132 6 C -0.057 4.057 7 C -0.159 4.159 8 C 0.024 3.976 9 C -0.342 4.342 10 H 0.104 0.896 11 C -0.002 4.002 12 N -0.704 5.704 13 Si 1.120 2.880 14 H -0.251 1.251 15 H -0.268 1.268 16 H -0.242 1.242 17 C -0.087 4.087 18 N 0.028 4.972 19 O -0.435 6.435 20 O -0.363 6.363 21 C -0.058 4.058 22 H 0.140 0.860 23 H 0.116 0.884 24 H 0.074 0.926 25 H 0.103 0.897 26 H 0.167 0.833 27 H 0.131 0.869 28 H 0.306 0.694 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.875 3.567 -10.128 11.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.074 4.074 3 C -0.059 4.059 4 C -0.092 4.092 5 C -0.137 4.137 6 C -0.075 4.075 7 C -0.178 4.178 8 C 0.019 3.981 9 C -0.372 4.372 10 H 0.122 0.878 11 C -0.230 4.230 12 N -0.324 5.324 13 Si 0.932 3.068 14 H -0.174 1.174 15 H -0.193 1.193 16 H -0.165 1.165 17 C -0.195 4.195 18 N 0.415 4.585 19 O -0.558 6.558 20 O -0.502 6.502 21 C -0.077 4.077 22 H 0.157 0.843 23 H 0.134 0.866 24 H 0.093 0.907 25 H 0.121 0.879 26 H 0.185 0.815 27 H 0.149 0.851 28 H 0.121 0.879 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.570 4.402 -10.559 11.984 hybrid contribution -0.651 -1.430 1.674 2.296 sum -4.221 2.972 -8.885 10.276 Atomic orbital electron populations 1.81244 1.14933 1.10807 1.11271 1.29687 0.95524 0.91204 0.91028 1.19536 0.78963 1.01401 1.05955 1.20293 0.88783 0.98391 1.01710 1.19503 0.95631 1.03033 0.95510 1.21100 0.93088 0.95660 0.97683 1.21254 0.95103 1.03948 0.97522 1.17762 0.94051 0.94858 0.91428 1.23810 0.92919 1.00523 1.19980 0.87792 1.30592 1.11904 0.89383 0.91172 1.70053 1.16028 1.26477 1.19800 0.82991 0.65312 0.79345 0.79112 1.17376 1.19331 1.16510 1.20511 0.92402 1.14569 0.92062 1.49846 1.01703 1.03070 1.03846 1.95989 1.68296 1.53603 1.37887 1.95974 0.91670 1.73292 1.89230 1.20332 0.90312 0.97898 0.99129 0.84251 0.86608 0.90736 0.87871 0.81515 0.85115 0.87881 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -13.68 18.54 20.00 0.37 -13.31 15 2 C 0.24 4.90 15.43 89.44 1.38 6.28 15 3 C -0.02 -0.27 5.68 28.79 0.16 -0.11 15 4 C -0.05 -0.95 5.29 29.85 0.16 -0.79 15 5 C -0.13 -3.57 5.17 -19.60 -0.10 -3.68 15 6 C -0.06 -1.47 9.62 22.00 0.21 -1.25 15 7 C -0.16 -5.38 7.98 22.61 0.18 -5.20 15 8 C 0.02 1.05 5.09 -21.27 -0.11 0.95 15 9 C -0.34 -15.60 7.69 24.95 0.19 -15.41 15 10 H 0.10 5.23 6.07 -2.91 -0.02 5.21 15 11 C 0.00 -0.07 5.26 87.20 0.46 0.39 15 12 N -0.70 -27.68 12.75 23.21 0.30 -27.38 15 13 Si 1.12 33.13 30.06 68.60 2.06 35.19 15 14 H -0.25 -6.86 7.11 99.48 0.71 -6.15 15 15 H -0.27 -8.40 7.11 99.48 0.71 -7.69 15 16 H -0.24 -6.36 7.11 99.48 0.71 -5.65 15 17 C -0.09 -4.16 6.91 36.72 0.25 -3.91 15 18 N 0.03 1.61 4.98 -45.65 -0.23 1.39 15 19 O -0.43 -26.42 19.14 3.52 0.07 -26.35 15 20 O -0.36 -22.18 16.29 3.50 0.06 -22.12 15 21 C -0.06 -2.20 9.17 22.00 0.20 -2.00 15 22 H 0.14 1.34 8.14 -2.39 -0.02 1.32 15 23 H 0.12 1.69 8.14 -2.39 -0.02 1.67 15 24 H 0.07 1.41 8.08 -2.39 -0.02 1.39 15 25 H 0.10 1.39 8.08 -2.39 -0.02 1.37 15 26 H 0.17 2.71 8.06 -2.91 -0.02 2.69 15 27 H 0.13 4.16 7.33 -2.91 -0.02 4.14 15 28 H 0.31 12.28 6.80 -92.70 -0.63 11.65 15 29 H 0.12 4.66 7.55 -2.91 -0.02 4.64 15 Total: -1.00 -69.67 274.64 6.94 -62.73 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: 1.33 Total: 14.58 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 2.99 Total: -24.73 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.44 Total: -39.30 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: 0.12 Total: -48.47 kcal Atomic # 14 Polarization: 33.13 SS G_CDS: 2.06 Total: 35.19 kcal Total: -69.67 6.94 -62.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396023752.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.972 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds