Wall clock time and date at job start Mon Mar 30 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47133 * 311.90078 * 3 2 1 5 5 C 1.50700 * 109.47154 * 180.02562 * 4 3 2 6 6 C 1.36524 * 120.15449 * 265.00379 * 5 4 3 7 7 C 1.38775 * 120.29482 * 179.72186 * 6 5 4 8 8 C 1.38808 * 120.60226 * 0.27516 * 7 6 5 9 9 N 1.48013 * 119.85288 * 180.02562 * 8 7 6 10 10 O 1.31704 * 119.99981 * 0.02562 * 9 8 7 11 11 O 1.31694 * 120.00271 * 180.02562 * 9 8 7 12 12 C 1.36488 * 120.29978 * 0.02562 * 8 7 6 13 13 C 1.41257 * 120.15106 * 85.26821 * 5 4 3 14 14 C 1.40339 * 120.29450 * 0.02562 * 13 5 4 15 15 H 1.08002 * 119.99492 * 335.47163 * 14 13 5 16 16 C 1.46545 * 120.00329 * 155.47425 * 14 13 5 17 17 N 1.29500 * 119.99532 * 344.88966 * 16 14 13 18 18 Si 1.86799 * 120.00186 * 164.88900 * 16 14 13 19 19 H 1.48503 * 109.47110 * 89.99778 * 18 16 14 20 20 H 1.48493 * 109.47361 * 209.99625 * 18 16 14 21 21 H 1.48500 * 109.47151 * 330.00192 * 18 16 14 22 22 H 1.09008 * 109.46754 * 191.90871 * 3 2 1 23 23 H 1.09000 * 109.47500 * 71.90836 * 3 2 1 24 24 H 1.09008 * 109.46654 * 60.00731 * 4 3 2 25 25 H 1.09000 * 109.47546 * 300.00730 * 4 3 2 26 26 H 1.08002 * 119.85223 * 0.02562 * 6 5 4 27 27 H 1.08003 * 119.69341 * 180.30432 * 7 6 5 28 28 H 1.08006 * 120.15209 * 179.97438 * 12 8 7 29 29 H 0.97003 * 119.99530 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.9625 1.0737 5 6 4.6254 -0.9613 1.0741 6 6 5.3122 -1.9047 0.3653 7 6 6.6999 -1.9029 0.3590 8 6 7.4085 -0.9484 1.0756 9 7 8.8885 -0.9615 1.0568 10 8 9.5301 -1.8772 0.3607 11 8 9.5638 -0.0577 1.7360 12 6 6.7468 0.0023 1.7976 13 6 5.3340 0.0124 1.8124 14 6 4.6408 0.9842 2.5504 15 1 3.6340 1.2577 2.2712 16 6 5.2831 1.6279 3.6996 17 7 6.3531 1.1125 4.2158 18 14 4.5585 3.1918 4.4197 19 1 3.5787 2.8412 5.4792 20 1 5.6454 4.0176 5.0043 21 1 3.8750 3.9598 3.3481 22 1 2.9708 1.0065 0.2121 23 1 2.9715 -0.3183 -0.9768 24 1 2.7556 -1.9683 0.8616 25 1 2.7549 -0.6435 2.0505 26 1 4.7730 -2.6527 -0.1970 27 1 7.2333 -2.6507 -0.2091 28 1 7.3006 0.7436 2.3546 29 1 6.7780 1.5384 4.9767 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396024271.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:44 Heat of formation + Delta-G solvation = 34.144198 kcal Electronic energy + Delta-G solvation = -16735.289644 eV Core-core repulsion = 13819.424190 eV Total energy + Delta-G solvation = -2915.865454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68064 -39.25630 -37.67919 -35.75692 -35.35415 -34.87461 -31.93251 -31.35646 -27.62816 -27.34911 -24.57532 -23.26122 -21.53929 -20.02372 -19.04837 -18.36995 -18.23110 -16.93648 -16.85478 -16.27998 -16.13603 -15.23407 -15.02068 -14.62965 -14.45426 -13.89332 -13.56082 -13.32747 -13.22839 -12.91879 -12.77567 -12.43289 -12.35151 -12.23282 -12.18801 -11.89689 -11.79114 -11.67221 -11.42549 -11.23288 -9.84169 -9.71820 -8.91689 -6.47120 -1.49233 0.46657 0.72610 0.83819 1.41518 1.48628 1.55895 1.89204 1.92824 2.11268 2.46417 3.17431 3.37349 4.11277 4.30278 4.34330 4.45107 4.49184 4.55993 4.72423 4.87077 4.90499 4.94699 5.23177 5.31661 5.40828 5.46061 5.62711 5.89564 5.94627 6.03799 6.33426 6.55574 6.70614 6.73356 7.99081 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.009378 C = 0.005928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.021139 B = 2984.916498 C = 4722.556183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.244 3.756 3 C -0.019 4.019 4 C -0.048 4.048 5 C -0.155 4.155 6 C -0.055 4.055 7 C -0.220 4.220 8 C 0.014 3.986 9 N -0.003 5.003 10 O -0.201 6.201 11 O -0.251 6.251 12 C -0.142 4.142 13 C 0.088 3.912 14 C -0.452 4.452 15 H 0.120 0.880 16 C 0.034 3.966 17 N -0.781 5.781 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.243 1.243 22 H 0.117 0.883 23 H 0.135 0.865 24 H 0.089 0.911 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.065 0.231 -3.134 6.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.072 4.072 3 C -0.058 4.058 4 C -0.087 4.087 5 C -0.157 4.157 6 C -0.074 4.074 7 C -0.241 4.241 8 C -0.073 4.073 9 N 0.465 4.535 10 O -0.396 6.396 11 O -0.431 6.431 12 C -0.163 4.163 13 C 0.084 3.916 14 C -0.477 4.477 15 H 0.137 0.863 16 C -0.191 4.191 17 N -0.401 5.401 18 Si 0.802 3.198 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.166 1.166 22 H 0.135 0.865 23 H 0.152 0.848 24 H 0.108 0.892 25 H 0.091 0.909 26 H 0.178 0.822 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.153 0.313 -2.887 8.655 hybrid contribution 1.546 0.605 0.734 1.815 sum -6.607 0.918 -2.152 7.009 Atomic orbital electron populations 1.81207 1.14767 1.11205 1.11178 1.29704 0.95510 0.91018 0.90982 1.19507 0.78961 1.04095 1.03267 1.20151 0.89813 0.99849 0.98858 1.19907 0.95631 0.96336 1.03851 1.20595 0.90888 0.98347 0.97559 1.20523 0.95295 1.01525 1.06780 1.20551 0.72675 1.04955 1.09086 1.51214 1.07051 0.98665 0.96529 1.96105 1.72889 1.29852 1.40798 1.96201 1.70060 1.32439 1.44404 1.21246 0.96352 0.98590 1.00154 1.17556 0.88766 0.92800 0.92482 1.21252 1.01889 1.16621 1.07967 0.86262 1.28453 0.93568 1.00717 0.96373 1.69115 1.16152 1.37334 1.17540 0.85158 0.78938 0.76330 0.79373 1.18311 1.19947 1.16593 0.86463 0.84767 0.89218 0.90882 0.82214 0.85285 0.86074 0.88474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -14.98 18.54 20.01 0.37 -14.61 15 2 C 0.24 5.77 15.43 89.44 1.38 7.15 15 3 C -0.02 -0.36 5.58 28.79 0.16 -0.20 15 4 C -0.05 -1.14 4.64 29.85 0.14 -1.01 15 5 C -0.16 -4.97 5.17 -19.52 -0.10 -5.07 15 6 C -0.06 -1.68 9.61 22.00 0.21 -1.47 15 7 C -0.22 -8.29 9.59 22.53 0.22 -8.08 15 8 C 0.01 0.62 6.84 36.10 0.25 0.86 15 9 N 0.00 -0.12 4.98 -47.12 -0.23 -0.36 15 10 O -0.20 -9.37 19.14 3.51 0.07 -9.30 15 11 O -0.25 -12.99 19.12 3.52 0.07 -12.93 15 12 C -0.14 -6.62 8.25 22.61 0.19 -6.44 15 13 C 0.09 3.56 5.61 -21.27 -0.12 3.44 15 14 C -0.45 -17.74 8.43 24.95 0.21 -17.53 15 15 H 0.12 4.03 6.16 -2.91 -0.02 4.01 15 16 C 0.03 1.38 5.36 87.20 0.47 1.84 15 17 N -0.78 -34.90 10.96 23.21 0.25 -34.64 15 18 Si 0.98 30.55 29.67 68.60 2.04 32.59 15 19 H -0.26 -7.84 7.11 99.48 0.71 -7.13 15 20 H -0.27 -8.69 7.11 99.48 0.71 -7.98 15 21 H -0.24 -7.14 7.11 99.48 0.71 -6.44 15 22 H 0.12 2.30 7.37 -2.38 -0.02 2.29 15 23 H 0.13 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.09 1.74 8.05 -2.38 -0.02 1.72 15 25 H 0.07 1.93 7.03 -2.39 -0.02 1.91 15 26 H 0.16 3.43 8.06 -2.91 -0.02 3.40 15 27 H 0.13 4.54 7.56 -2.91 -0.02 4.52 15 28 H 0.12 6.26 5.60 -2.91 -0.02 6.24 15 29 H 0.30 12.38 8.27 -92.71 -0.77 11.62 15 Total: -1.00 -56.45 274.49 6.76 -49.69 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.20 Total: 16.04 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 3.00 Total: -26.48 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.39 Total: -49.61 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.13 Total: -22.23 kcal Atomic # 14 Polarization: 30.55 SS G_CDS: 2.04 Total: 32.59 kcal Total: -56.45 6.76 -49.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024271.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.829 kcal (2) G-P(sol) polarization free energy of solvation -56.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds