Wall clock time and date at job start Mon Mar 30 2020 06:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47482 * 10.05558 * 3 2 1 5 5 C 1.50704 * 109.47411 * 180.02562 * 4 3 2 6 6 C 1.38809 * 119.85012 * 265.02165 * 5 4 3 7 7 C 1.38775 * 120.60265 * 179.97438 * 6 5 4 8 8 C 1.36523 * 120.29614 * 359.69003 * 7 6 5 9 9 C 1.41260 * 119.68890 * 0.55708 * 8 7 6 10 10 C 1.40344 * 120.28724 * 179.73788 * 9 8 7 11 11 H 1.08001 * 119.99708 * 155.52716 * 10 9 8 12 12 C 1.46536 * 120.00530 * 335.26037 * 10 9 8 13 13 N 1.29509 * 119.99922 * 344.90618 * 12 10 9 14 14 Si 1.86801 * 120.00402 * 164.90939 * 12 10 9 15 15 H 1.48502 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47258 * 120.00095 * 14 12 10 17 17 H 1.48505 * 109.47077 * 240.00110 * 14 12 10 18 18 C 1.36490 * 119.85047 * 84.99804 * 5 4 3 19 19 N 1.48012 * 120.15122 * 359.97438 * 18 5 4 20 20 O 1.31705 * 120.00231 * 270.01832 * 19 18 5 21 21 O 1.31703 * 119.99601 * 90.03044 * 19 18 5 22 22 H 1.08999 * 109.47434 * 250.05190 * 3 2 1 23 23 H 1.09004 * 109.46847 * 130.05583 * 3 2 1 24 24 H 1.09001 * 109.47364 * 59.99876 * 4 3 2 25 25 H 1.09004 * 109.47100 * 299.99870 * 4 3 2 26 26 H 1.08006 * 119.70122 * 359.97165 * 6 5 4 27 27 H 1.07998 * 119.85308 * 180.02562 * 7 6 5 28 28 H 1.07994 * 120.15537 * 180.30200 * 8 7 6 29 29 H 0.97000 * 120.00024 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4194 -0.2519 5 6 4.6257 -1.4188 -0.2512 6 6 5.3171 -1.3118 -1.4501 7 6 6.7047 -1.3091 -1.4677 8 6 7.4084 -1.4057 -0.3017 9 6 6.7175 -1.5204 0.9250 10 6 7.4283 -1.6260 2.1305 11 1 6.9658 -1.3234 3.0584 12 6 8.7960 -2.1521 2.1311 13 7 9.2466 -2.7854 1.0952 14 14 9.8895 -1.9095 3.6261 15 1 9.1438 -1.1592 4.6683 16 1 10.2947 -3.2333 4.1631 17 1 11.0995 -1.1425 3.2351 18 6 5.3046 -1.5230 0.9283 19 7 4.5641 -1.6358 2.2048 20 8 4.2343 -0.5499 2.8731 21 8 4.2353 -2.8222 2.6727 22 1 2.9712 0.3514 0.9660 23 1 2.9710 0.6622 -0.7866 24 1 2.7555 -1.7702 -1.2179 25 1 2.7557 -2.0809 0.5348 26 1 4.7701 -1.2299 -2.3778 27 1 7.2303 -1.2249 -2.4073 28 1 8.4882 -1.3984 -0.3176 29 1 10.1518 -3.1340 1.0958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396024678.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:25 Heat of formation + Delta-G solvation = 48.848511 kcal Electronic energy + Delta-G solvation = -17053.167680 eV Core-core repulsion = 14137.939852 eV Total energy + Delta-G solvation = -2915.227827 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.13002 -37.10071 -36.66701 -34.70131 -33.33934 -33.21952 -30.84453 -29.55953 -26.45389 -24.87915 -24.07588 -21.14394 -20.41000 -17.83960 -17.32400 -17.19083 -17.09137 -16.02556 -15.37984 -14.58690 -14.52463 -13.80990 -13.42864 -13.38631 -13.16260 -12.49456 -12.40889 -12.18959 -11.81942 -11.66541 -11.47097 -11.23753 -10.84744 -10.80211 -10.60278 -10.43722 -10.26053 -9.87364 -9.76434 -9.71122 -8.30821 -8.05541 -7.48717 -5.03694 0.85563 2.07392 2.26613 2.45634 2.76673 2.79813 2.84229 2.91235 2.91895 3.50108 3.93997 4.13158 4.84477 5.09649 5.26687 5.29892 5.65217 5.75481 5.99766 5.99978 6.14753 6.22862 6.38904 6.55269 6.65615 6.90918 7.15155 7.35527 7.45601 7.52071 7.66810 7.72757 7.91352 8.00455 8.22828 9.38569 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.007164 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.019722 B = 3907.337008 C = 4558.348833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.217 3.783 3 C -0.029 4.029 4 C -0.084 4.084 5 C -0.002 4.002 6 C -0.239 4.239 7 C -0.077 4.077 8 C -0.155 4.155 9 C 0.140 3.860 10 C -0.440 4.440 11 H 0.090 0.910 12 C 0.077 3.923 13 N -0.737 5.737 14 Si 0.926 3.074 15 H -0.250 1.250 16 H -0.264 1.264 17 H -0.263 1.263 18 C -0.138 4.138 19 N 0.013 4.987 20 O -0.191 6.191 21 O -0.178 6.178 22 H 0.117 0.883 23 H 0.115 0.885 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 2.433 -3.267 4.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.100 4.100 3 C -0.069 4.069 4 C -0.123 4.123 5 C -0.004 4.004 6 C -0.258 4.258 7 C -0.095 4.095 8 C -0.175 4.175 9 C 0.135 3.865 10 C -0.465 4.465 11 H 0.108 0.892 12 C -0.152 4.152 13 N -0.356 5.356 14 Si 0.748 3.252 15 H -0.173 1.173 16 H -0.189 1.189 17 H -0.187 1.187 18 C -0.220 4.220 19 N 0.505 4.495 20 O -0.393 6.393 21 O -0.383 6.383 22 H 0.135 0.865 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.151 0.849 29 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.588 2.370 -4.019 4.703 hybrid contribution 0.803 -0.124 0.952 1.252 sum 1.391 2.246 -3.067 4.048 Atomic orbital electron populations 1.81166 1.13020 1.08852 1.09642 1.29275 0.95283 0.92880 0.92567 1.19424 0.81170 0.99571 1.06730 1.20585 0.92897 0.95001 1.03787 1.18359 0.92831 0.98080 0.91114 1.20154 0.93945 1.17131 0.94601 1.20608 0.93759 0.97693 0.97481 1.21140 1.00096 1.05796 0.90419 1.17056 0.86405 0.88232 0.94766 1.21021 0.96578 1.34325 0.94610 0.89236 1.27544 0.98142 0.91219 0.98343 1.69076 1.17868 1.18694 1.29930 0.85925 0.78999 0.79966 0.80355 1.17269 1.18890 1.18707 1.19580 0.91189 1.32774 0.78460 1.50487 0.95438 1.00890 1.02650 1.96142 1.59239 1.23332 1.60553 1.96178 1.58832 1.09572 1.73768 0.86527 0.86744 0.89644 0.90994 0.87267 0.87765 0.84918 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.75 18.54 42.15 0.78 -6.97 15 2 C 0.22 3.30 15.43 -20.76 -0.32 2.98 15 3 C -0.03 -0.40 5.68 -29.52 -0.17 -0.57 15 4 C -0.08 -1.34 4.97 -27.88 -0.14 -1.48 15 5 C 0.00 -0.04 5.10 -105.04 -0.54 -0.58 15 6 C -0.24 -4.29 9.69 -39.17 -0.38 -4.67 15 7 C -0.08 -1.45 9.98 -40.00 -0.40 -1.85 15 8 C -0.16 -3.38 8.73 -39.05 -0.34 -3.72 15 9 C 0.14 3.34 5.61 -106.80 -0.60 2.74 15 10 C -0.44 -10.70 8.98 -35.45 -0.32 -11.02 15 11 H 0.09 2.26 7.62 -52.49 -0.40 1.86 15 12 C 0.08 1.67 5.36 -15.19 -0.08 1.59 15 13 N -0.74 -15.89 10.96 55.98 0.61 -15.27 15 14 Si 0.93 16.34 29.67 -169.99 -5.04 11.29 15 15 H -0.25 -4.56 7.11 56.52 0.40 -4.16 15 16 H -0.26 -4.58 7.11 56.52 0.40 -4.17 15 17 H -0.26 -4.40 7.11 56.52 0.40 -4.00 15 18 C -0.14 -3.13 6.24 -79.42 -0.50 -3.63 15 19 N 0.01 0.30 3.04 34.22 0.10 0.41 15 20 O -0.19 -4.39 18.88 -31.57 -0.60 -4.99 15 21 O -0.18 -4.35 19.92 -31.57 -0.63 -4.98 15 22 H 0.12 1.78 7.03 -51.93 -0.36 1.41 15 23 H 0.11 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.08 1.17 8.05 -51.93 -0.42 0.75 15 25 H 0.07 1.28 7.52 -51.93 -0.39 0.89 15 26 H 0.11 1.63 8.06 -52.48 -0.42 1.21 15 27 H 0.10 1.67 8.06 -52.49 -0.42 1.24 15 28 H 0.13 2.91 6.11 -52.49 -0.32 2.58 15 29 H 0.30 5.61 8.27 -40.82 -0.34 5.27 15 LS Contribution 276.98 15.07 4.17 4.17 Total: -1.00 -26.13 276.98 -6.67 -32.80 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -2.30 Total: 3.76 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.78 Total: -20.22 kcal Atomic # 7 Polarization: -23.34 SS G_CDS: 1.50 Total: -21.84 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.23 Total: -9.97 kcal Atomic # 14 Polarization: 16.34 SS G_CDS: -5.04 Total: 11.29 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.13 -6.67 -32.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024678.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.645 kcal (2) G-P(sol) polarization free energy of solvation -26.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds