Wall clock time and date at job start Mon Mar 30 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 C 1.52995 * 109.47482 * 10.05558 * 3 2 1 5 5 C 1.50704 * 109.47411 * 180.02562 * 4 3 2 6 6 C 1.38809 * 119.85012 * 265.02165 * 5 4 3 7 7 C 1.38775 * 120.60265 * 179.97438 * 6 5 4 8 8 C 1.36523 * 120.29614 * 359.69003 * 7 6 5 9 9 C 1.41260 * 119.68890 * 0.55708 * 8 7 6 10 10 C 1.40344 * 120.28724 * 179.73788 * 9 8 7 11 11 H 1.08001 * 119.99708 * 155.52716 * 10 9 8 12 12 C 1.46536 * 120.00530 * 335.26037 * 10 9 8 13 13 N 1.29509 * 119.99922 * 344.90618 * 12 10 9 14 14 Si 1.86801 * 120.00402 * 164.90939 * 12 10 9 15 15 H 1.48502 * 109.47069 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47258 * 120.00095 * 14 12 10 17 17 H 1.48505 * 109.47077 * 240.00110 * 14 12 10 18 18 C 1.36490 * 119.85047 * 84.99804 * 5 4 3 19 19 N 1.48012 * 120.15122 * 359.97438 * 18 5 4 20 20 O 1.31705 * 120.00231 * 270.01832 * 19 18 5 21 21 O 1.31703 * 119.99601 * 90.03044 * 19 18 5 22 22 H 1.08999 * 109.47434 * 250.05190 * 3 2 1 23 23 H 1.09004 * 109.46847 * 130.05583 * 3 2 1 24 24 H 1.09001 * 109.47364 * 59.99876 * 4 3 2 25 25 H 1.09004 * 109.47100 * 299.99870 * 4 3 2 26 26 H 1.08006 * 119.70122 * 359.97165 * 6 5 4 27 27 H 1.07998 * 119.85308 * 180.02562 * 7 6 5 28 28 H 1.07994 * 120.15537 * 180.30200 * 8 7 6 29 29 H 0.97000 * 120.00024 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4194 -0.2519 5 6 4.6257 -1.4188 -0.2512 6 6 5.3171 -1.3118 -1.4501 7 6 6.7047 -1.3091 -1.4677 8 6 7.4084 -1.4057 -0.3017 9 6 6.7175 -1.5204 0.9250 10 6 7.4283 -1.6260 2.1305 11 1 6.9658 -1.3234 3.0584 12 6 8.7960 -2.1521 2.1311 13 7 9.2466 -2.7854 1.0952 14 14 9.8895 -1.9095 3.6261 15 1 9.1438 -1.1592 4.6683 16 1 10.2947 -3.2333 4.1631 17 1 11.0995 -1.1425 3.2351 18 6 5.3046 -1.5230 0.9283 19 7 4.5641 -1.6358 2.2048 20 8 4.2343 -0.5499 2.8731 21 8 4.2353 -2.8222 2.6727 22 1 2.9712 0.3514 0.9660 23 1 2.9710 0.6622 -0.7866 24 1 2.7555 -1.7702 -1.2179 25 1 2.7557 -2.0809 0.5348 26 1 4.7701 -1.2299 -2.3778 27 1 7.2303 -1.2249 -2.4073 28 1 8.4882 -1.3984 -0.3176 29 1 10.1518 -3.1340 1.0958 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396024678.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:24 Heat of formation + Delta-G solvation = 36.604014 kcal Electronic energy + Delta-G solvation = -17053.698641 eV Core-core repulsion = 14137.939852 eV Total energy + Delta-G solvation = -2915.758788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77364 -38.84249 -37.97798 -36.23741 -35.21414 -34.66129 -32.49134 -31.03855 -28.12490 -26.54059 -25.51912 -22.75496 -22.01258 -19.42738 -19.06491 -18.87373 -18.50875 -17.61716 -16.91746 -16.02246 -15.90350 -15.22245 -15.02787 -14.87102 -14.58218 -13.94146 -13.81451 -13.66309 -13.25444 -13.10575 -12.91319 -12.67182 -12.38978 -12.34790 -12.18658 -12.05856 -11.79933 -11.63590 -11.54920 -11.30267 -9.91912 -9.65369 -9.07706 -6.75863 -1.01958 0.45237 0.68041 0.73085 1.30001 1.38715 1.44299 1.66922 1.70823 2.06073 2.35960 2.89987 3.21806 3.85063 3.89902 4.05505 4.38899 4.41963 4.55920 4.61196 4.71772 4.72569 4.93656 4.98980 5.06757 5.26027 5.61516 5.68084 5.83487 5.85428 5.91347 6.27940 6.31223 6.47207 6.58022 7.83566 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029622 B = 0.007164 C = 0.006141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.019722 B = 3907.337008 C = 4558.348833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.240 3.760 3 C -0.019 4.019 4 C -0.080 4.080 5 C -0.005 4.005 6 C -0.218 4.218 7 C -0.068 4.068 8 C -0.178 4.178 9 C 0.116 3.884 10 C -0.489 4.489 11 H 0.062 0.938 12 C 0.048 3.952 13 N -0.757 5.757 14 Si 0.987 3.013 15 H -0.267 1.267 16 H -0.256 1.256 17 H -0.242 1.242 18 C -0.167 4.167 19 N 0.019 4.981 20 O -0.173 6.173 21 O -0.223 6.223 22 H 0.103 0.897 23 H 0.153 0.847 24 H 0.118 0.882 25 H 0.047 0.953 26 H 0.156 0.844 27 H 0.141 0.859 28 H 0.126 0.874 29 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.081 3.131 -5.425 6.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.077 4.077 3 C -0.058 4.058 4 C -0.119 4.119 5 C -0.007 4.007 6 C -0.237 4.237 7 C -0.086 4.086 8 C -0.197 4.197 9 C 0.112 3.888 10 C -0.514 4.514 11 H 0.081 0.919 12 C -0.179 4.179 13 N -0.377 5.377 14 Si 0.806 3.194 15 H -0.191 1.191 16 H -0.180 1.180 17 H -0.165 1.165 18 C -0.249 4.249 19 N 0.510 4.490 20 O -0.384 6.384 21 O -0.418 6.418 22 H 0.121 0.879 23 H 0.170 0.830 24 H 0.136 0.864 25 H 0.066 0.934 26 H 0.174 0.826 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.943 2.960 -6.203 6.937 hybrid contribution 0.626 -0.263 1.489 1.636 sum 1.569 2.697 -4.714 5.653 Atomic orbital electron populations 1.81199 1.14158 1.10054 1.10967 1.29357 0.95214 0.91726 0.91378 1.19419 0.80096 0.98936 1.07381 1.20598 0.90656 0.95869 1.04786 1.18779 0.94614 0.97092 0.90218 1.20725 0.93779 1.13647 0.95584 1.21065 0.94509 0.95175 0.97843 1.21175 1.00044 1.07656 0.90860 1.17425 0.87135 0.88581 0.95613 1.21037 0.98766 1.37642 0.94000 0.91927 1.28162 0.98199 0.90583 1.00964 1.69031 1.18895 1.18736 1.31060 0.85073 0.77615 0.80084 0.76665 1.19112 1.18012 1.16492 1.20061 0.91377 1.34621 0.78880 1.50705 0.94917 1.00492 1.02888 1.96103 1.58316 1.23399 1.60571 1.96171 1.60994 1.09956 1.74689 0.87908 0.82986 0.86356 0.93391 0.82636 0.84081 0.85669 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.00 18.54 20.00 0.37 -15.63 15 2 C 0.24 6.74 15.43 89.44 1.38 8.12 15 3 C -0.02 -0.46 5.68 28.78 0.16 -0.30 15 4 C -0.08 -2.36 4.97 29.85 0.15 -2.21 15 5 C -0.01 -0.20 5.10 -20.13 -0.10 -0.30 15 6 C -0.22 -6.87 9.69 22.54 0.22 -6.65 15 7 C -0.07 -2.33 9.98 22.00 0.22 -2.11 15 8 C -0.18 -7.64 8.73 22.61 0.20 -7.44 15 9 C 0.12 5.66 5.61 -21.27 -0.12 5.54 15 10 C -0.49 -24.85 8.98 24.95 0.22 -24.62 15 11 H 0.06 3.38 7.62 -2.91 -0.02 3.35 15 12 C 0.05 2.14 5.36 87.20 0.47 2.60 15 13 N -0.76 -32.93 10.96 23.21 0.25 -32.68 15 14 Si 0.99 33.92 29.67 68.60 2.04 35.95 15 15 H -0.27 -9.79 7.11 99.48 0.71 -9.08 15 16 H -0.26 -8.36 7.11 99.48 0.71 -7.66 15 17 H -0.24 -7.42 7.11 99.48 0.71 -6.72 15 18 C -0.17 -7.66 6.24 36.72 0.23 -7.43 15 19 N 0.02 0.92 3.04 -45.65 -0.14 0.78 15 20 O -0.17 -8.13 18.88 3.51 0.07 -8.06 15 21 O -0.22 -11.40 19.92 3.51 0.07 -11.33 15 22 H 0.10 2.96 7.03 -2.39 -0.02 2.94 15 23 H 0.15 2.70 8.14 -2.38 -0.02 2.68 15 24 H 0.12 2.70 8.05 -2.39 -0.02 2.68 15 25 H 0.05 1.65 7.52 -2.38 -0.02 1.63 15 26 H 0.16 3.54 8.06 -2.91 -0.02 3.52 15 27 H 0.14 3.81 8.06 -2.91 -0.02 3.79 15 28 H 0.13 5.49 6.11 -2.91 -0.02 5.47 15 29 H 0.31 11.62 8.27 -92.71 -0.77 10.86 15 Total: -1.00 -59.18 276.98 6.88 -52.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.19 Total: 13.46 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.03 Total: -34.79 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.49 Total: -47.53 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.14 Total: -19.39 kcal Atomic # 14 Polarization: 33.92 SS G_CDS: 2.04 Total: 35.95 kcal Total: -59.18 6.88 -52.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396024678.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.909 kcal (2) G-P(sol) polarization free energy of solvation -59.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds