Wall clock time and date at job start Mon Mar 30 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 120.00314 * 2 1 4 4 H 1.48496 * 109.46993 * 240.00399 * 3 2 1 5 5 H 1.48509 * 109.46677 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47213 * 119.99799 * 3 2 1 7 7 C 1.39932 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99713 * 163.99006 * 7 2 1 9 9 C 1.41044 * 119.99849 * 343.99416 * 7 2 1 10 10 C 1.40726 * 120.30879 * 333.68986 * 9 7 2 11 11 C 1.36454 * 119.94984 * 179.97438 * 10 9 7 12 12 C 1.50697 * 119.69905 * 179.97438 * 11 10 9 13 13 F 1.39899 * 109.47413 * 90.00295 * 12 11 10 14 14 F 1.39904 * 109.47030 * 210.00116 * 12 11 10 15 15 F 1.39899 * 109.47067 * 329.99868 * 12 11 10 16 16 C 1.38898 * 120.59709 * 0.02562 * 11 10 9 17 17 C 1.38164 * 120.62856 * 359.97438 * 16 11 10 18 18 C 1.38757 * 120.02265 * 359.97438 * 17 16 11 19 19 N 1.38734 * 120.29093 * 180.27602 * 18 17 16 20 20 N 1.36599 * 119.99912 * 359.72235 * 19 18 17 21 21 H 0.97003 * 119.99778 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.02466 * 359.96566 * 10 9 7 23 23 H 1.07997 * 119.68381 * 179.97438 * 16 11 10 24 24 H 1.07998 * 119.98630 * 180.02562 * 17 16 11 25 25 H 0.96997 * 119.99822 * 179.72556 * 19 18 17 26 26 H 1.00903 * 110.99814 * 180.02562 * 20 19 18 27 27 H 1.00902 * 111.00317 * 303.95219 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0966 1.6964 1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0570 -1.2301 -0.2574 9 6 1.3441 -2.4095 0.3379 10 6 0.2134 -2.3828 1.1752 11 6 -0.4240 -3.5458 1.4965 12 6 -1.6340 -3.5107 2.3940 13 9 -2.7876 -3.3645 1.6162 14 9 -1.7100 -4.7036 3.1212 15 9 -1.5277 -2.4317 3.2781 16 6 0.0330 -4.7617 1.0045 17 6 1.1408 -4.8160 0.1806 18 6 1.8080 -3.6491 -0.1635 19 7 2.9175 -3.6967 -0.9951 20 7 3.3609 -4.8965 -1.4743 21 1 -0.4850 0.8401 0.0004 22 1 -0.1496 -1.4426 1.5634 23 1 -0.4825 -5.6732 1.2685 24 1 1.4869 -5.7670 -0.1964 25 1 3.3783 -2.8779 -1.2361 26 1 4.1719 -4.7737 -2.0620 27 1 3.5553 -5.5377 -0.7199 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047720.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:03 Heat of formation + Delta-G solvation = -125.988595 kcal Electronic energy + Delta-G solvation = -17859.036212 eV Core-core repulsion = 14394.370139 eV Total energy + Delta-G solvation = -3464.666073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.96064 -48.47882 -48.43057 -40.06214 -37.19996 -35.56200 -32.47555 -31.37887 -28.64603 -27.32037 -25.52096 -23.11940 -21.89536 -19.69750 -19.31373 -19.27269 -18.53423 -18.04612 -17.65106 -16.63100 -15.82969 -15.41603 -15.36638 -15.00551 -14.91891 -14.72277 -14.67894 -14.63565 -14.22226 -14.00625 -13.65135 -13.13940 -12.93180 -12.70081 -12.30931 -12.03605 -11.71300 -11.47949 -11.03480 -9.94592 -9.40691 -8.59749 -7.99926 -6.12522 0.78737 1.01783 1.41840 1.50742 1.53859 1.96144 2.23541 2.50558 2.72565 3.17783 3.38180 3.45901 3.84795 4.34499 4.52607 4.69848 5.07393 5.12053 5.31120 5.47184 5.60326 5.86331 5.94608 6.00265 6.22879 6.46604 6.83924 6.93132 7.15857 7.67962 8.42132 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.010664 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.966378 B = 2624.980807 C = 3978.183112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.033 3.967 3 Si 0.978 3.022 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.032 3.968 10 C -0.118 4.118 11 C -0.221 4.221 12 C 0.514 3.486 13 F -0.191 7.191 14 F -0.182 7.182 15 F -0.190 7.190 16 C -0.143 4.143 17 C -0.172 4.172 18 C 0.148 3.852 19 N -0.595 5.595 20 N -0.604 5.604 21 H 0.284 0.716 22 H 0.109 0.891 23 H 0.124 0.876 24 H 0.133 0.867 25 H 0.403 0.597 26 H 0.364 0.636 27 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.902 -4.366 0.604 5.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.181 1.181 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.026 3.974 10 C -0.140 4.140 11 C -0.224 4.224 12 C 0.460 3.540 13 F -0.172 7.172 14 F -0.163 7.163 15 F -0.172 7.172 16 C -0.163 4.163 17 C -0.196 4.196 18 C 0.044 3.956 19 N -0.320 5.320 20 N -0.230 5.230 21 H 0.095 0.905 22 H 0.127 0.873 23 H 0.142 0.858 24 H 0.150 0.850 25 H 0.242 0.758 26 H 0.178 0.822 27 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.032 -4.433 0.181 5.373 hybrid contribution 0.907 1.307 0.574 1.692 sum 3.939 -3.125 0.756 5.085 Atomic orbital electron populations 1.69877 1.08932 1.30257 1.37053 1.26617 0.95359 1.04229 0.91823 0.85311 0.78639 0.76228 0.79884 1.18145 1.20204 1.18784 1.19329 0.97383 0.91538 1.43767 0.89881 1.17337 0.94425 0.91787 0.93818 1.20461 0.98651 0.95638 0.99216 1.19349 0.98569 0.97201 1.07309 1.18514 0.83974 0.72597 0.78918 1.93138 1.53422 1.95501 1.75186 1.93103 1.96811 1.47189 1.79213 1.93105 1.96316 1.56903 1.70856 1.20249 0.98972 0.95027 1.02005 1.20233 0.98484 0.96757 1.04091 1.18038 0.90216 0.94013 0.93296 1.42772 1.30405 1.03352 1.55472 1.60049 1.40682 1.00577 1.21740 0.90512 0.87349 0.85800 0.84966 0.75788 0.82159 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.48 10.97 21.83 0.24 -43.24 15 2 C 0.03 1.62 5.16 85.25 0.44 2.06 15 3 Si 0.98 37.11 29.59 68.60 2.03 39.14 15 4 H -0.26 -9.24 7.11 99.48 0.71 -8.54 15 5 H -0.28 -10.36 7.11 99.48 0.71 -9.65 15 6 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 7 C -0.49 -24.21 8.48 23.37 0.20 -24.01 15 8 H 0.08 3.75 6.73 -2.91 -0.02 3.73 15 9 C 0.03 1.62 5.57 -21.17 -0.12 1.50 15 10 C -0.12 -6.11 7.96 22.46 0.18 -5.93 15 11 C -0.22 -10.33 5.42 -20.12 -0.11 -10.44 15 12 C 0.51 22.01 3.35 71.24 0.24 22.24 15 13 F -0.19 -8.23 17.30 44.97 0.78 -7.45 15 14 F -0.18 -6.98 16.43 44.97 0.74 -6.25 15 15 F -0.19 -8.31 16.41 44.97 0.74 -7.57 15 16 C -0.14 -6.04 9.39 22.41 0.21 -5.83 15 17 C -0.17 -7.07 9.35 22.38 0.21 -6.87 15 18 C 0.15 6.55 6.73 38.99 0.26 6.81 15 19 N -0.59 -21.60 6.55 -50.39 -0.33 -21.93 15 20 N -0.60 -16.65 9.59 37.02 0.35 -16.29 15 21 H 0.28 13.73 8.30 -92.71 -0.77 12.96 15 22 H 0.11 6.02 5.72 -2.91 -0.02 6.00 15 23 H 0.12 4.58 7.57 -2.91 -0.02 4.56 15 24 H 0.13 4.67 7.04 -2.91 -0.02 4.65 15 25 H 0.40 14.26 7.08 -215.50 -1.52 12.73 15 26 H 0.36 7.41 9.21 -210.55 -1.94 5.48 15 27 H 0.33 8.21 8.44 -210.55 -1.78 6.44 15 Total: -1.00 -56.89 249.65 2.09 -54.80 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: -3.97 Total: 29.24 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 1.51 Total: -20.45 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: 0.26 Total: -81.46 kcal Atomic # 9 Polarization: -23.52 SS G_CDS: 2.26 Total: -21.27 kcal Atomic # 14 Polarization: 37.11 SS G_CDS: 2.03 Total: 39.14 kcal Total: -56.89 2.09 -54.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047720.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.189 kcal (2) G-P(sol) polarization free energy of solvation -56.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds