Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48503 * 109.46924 * 240.00052 * 3 2 1 5 5 H 1.48495 * 109.47011 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47112 * 120.00083 * 3 2 1 7 7 C 1.39940 * 120.00285 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 162.62545 * 7 2 1 9 9 C 1.41402 * 119.99690 * 342.62505 * 7 2 1 10 10 C 1.40787 * 120.21072 * 334.94134 * 9 7 2 11 11 C 1.37646 * 119.89779 * 179.97438 * 10 9 7 12 12 C 1.38527 * 120.31956 * 359.74031 * 11 10 9 13 13 C 1.50702 * 119.78449 * 180.27991 * 12 11 10 14 14 F 1.39898 * 109.47106 * 0.23612 * 13 12 11 15 15 F 1.39907 * 109.46938 * 120.23479 * 13 12 11 16 16 F 1.39901 * 109.46892 * 240.23133 * 13 12 11 17 17 C 1.39294 * 120.42817 * 0.51322 * 12 11 10 18 18 N 1.39678 * 119.95130 * 179.76356 * 17 12 11 19 19 N 1.36607 * 119.99974 * 179.72802 * 18 17 12 20 20 C 1.38321 * 120.09186 * 359.48906 * 17 12 11 21 21 H 0.96997 * 119.99952 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.05007 * 359.97438 * 10 9 7 23 23 H 1.08000 * 119.83964 * 179.97438 * 11 10 9 24 24 H 0.96994 * 120.00516 * 359.72209 * 18 17 12 25 25 H 1.00894 * 111.00048 * 180.02562 * 19 18 17 26 26 H 1.00901 * 110.99871 * 303.95399 * 19 18 17 27 27 H 1.08002 * 120.15470 * 180.22750 * 20 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0510 -1.2331 -0.2798 9 6 1.3494 -2.4087 0.3646 10 6 0.2199 -2.3680 1.2042 11 6 -0.4166 -3.5369 1.5552 12 6 0.0455 -4.7540 1.0819 13 6 -0.6644 -6.0259 1.4687 14 9 -1.7497 -5.7207 2.2970 15 9 -1.1245 -6.6721 0.3163 16 9 0.2221 -6.8655 2.1517 17 6 1.1648 -4.8104 0.2547 18 7 1.6250 -6.0436 -0.2128 19 7 2.7193 -6.0995 -1.0286 20 6 1.8177 -3.6465 -0.1089 21 1 -0.4850 0.8400 0.0004 22 1 -0.1464 -1.4211 1.5723 23 1 -1.2826 -3.5046 2.1996 24 1 1.1677 -6.8602 0.0418 25 1 2.9315 -7.0523 -1.2841 26 1 2.5888 -5.5261 -1.8485 27 1 2.6835 -3.6888 -0.7532 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047910.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = -130.373257 kcal Electronic energy + Delta-G solvation = -17891.011894 eV Core-core repulsion = 14426.155688 eV Total energy + Delta-G solvation = -3464.856207 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.01170 -48.52809 -48.45789 -39.97956 -37.44289 -35.51334 -32.50317 -31.35990 -28.50633 -27.89768 -25.28697 -22.59945 -22.46724 -19.81305 -19.34045 -19.32976 -18.92471 -17.98512 -17.25419 -16.85562 -15.84808 -15.49909 -15.40407 -15.13890 -14.95586 -14.76603 -14.68658 -14.66484 -14.47092 -13.87157 -13.75041 -13.17345 -12.84103 -12.71203 -12.16384 -12.06167 -11.78001 -11.41508 -11.07479 -9.88695 -9.58857 -8.72808 -7.94573 -6.48523 0.72996 1.24313 1.42713 1.52352 1.56060 1.94428 2.19356 2.24128 2.60906 3.25642 3.32368 3.50222 3.85040 4.24162 4.36645 4.99575 5.02492 5.09108 5.26846 5.42511 5.64980 5.71929 5.94850 6.04702 6.21637 6.55500 6.75468 6.87941 6.98931 7.40804 8.24356 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.032062 B = 0.007253 C = 0.006235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.094289 B = 3859.716420 C = 4489.717608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.267 1.267 6 H -0.260 1.260 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.131 3.869 10 C -0.220 4.220 11 C -0.035 4.035 12 C -0.387 4.387 13 C 0.527 3.473 14 F -0.186 7.186 15 F -0.192 7.192 16 F -0.190 7.190 17 C 0.286 3.714 18 N -0.604 5.604 19 N -0.602 5.602 20 C -0.303 4.303 21 H 0.294 0.706 22 H 0.110 0.890 23 H 0.118 0.882 24 H 0.397 0.603 25 H 0.366 0.634 26 H 0.336 0.664 27 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.758 -5.899 -0.633 5.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.181 1.181 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.505 4.505 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.240 4.240 11 C -0.054 4.054 12 C -0.395 4.395 13 C 0.473 3.527 14 F -0.167 7.167 15 F -0.174 7.174 16 F -0.171 7.171 17 C 0.182 3.818 18 N -0.329 5.329 19 N -0.229 5.229 20 C -0.327 4.327 21 H 0.105 0.895 22 H 0.128 0.872 23 H 0.136 0.864 24 H 0.235 0.765 25 H 0.181 0.819 26 H 0.151 0.849 27 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.056 -5.493 -0.147 5.596 hybrid contribution -0.767 -0.383 -0.691 1.101 sum 0.289 -5.876 -0.838 5.943 Atomic orbital electron populations 1.69866 1.09168 1.31333 1.32583 1.26866 0.95487 1.04759 0.90819 0.85180 0.78786 0.75139 0.80248 1.18142 1.19085 1.18393 1.19986 0.98512 0.92038 1.39979 0.89761 1.17853 0.90188 0.92653 0.86636 1.21123 1.01408 0.96591 1.04901 1.20366 0.97521 0.91001 0.96534 1.18752 1.07105 0.92014 1.21582 1.18130 0.76378 0.84365 0.73801 1.93068 1.57170 1.93181 1.73292 1.93123 1.89661 1.83927 1.50669 1.93135 1.68794 1.74443 1.80739 1.16920 0.89898 0.85105 0.89898 1.43257 1.31527 1.05473 1.52640 1.60027 1.24699 1.17299 1.20826 1.20413 1.07579 0.90741 1.14007 0.89515 0.87202 0.86420 0.76468 0.81889 0.84880 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.77 10.97 21.82 0.24 -39.54 15 2 C 0.04 1.84 5.14 85.26 0.44 2.28 15 3 Si 0.99 35.69 29.59 68.60 2.03 37.72 15 4 H -0.26 -8.99 7.11 99.48 0.71 -8.29 15 5 H -0.27 -9.11 7.11 99.48 0.71 -8.40 15 6 H -0.26 -9.27 7.11 99.48 0.71 -8.57 15 7 C -0.48 -24.44 9.05 23.46 0.21 -24.23 15 8 H 0.08 4.13 7.90 -2.91 -0.02 4.11 15 9 C 0.13 6.85 5.57 -21.31 -0.12 6.73 15 10 C -0.22 -11.31 8.69 22.75 0.20 -11.11 15 11 C -0.04 -1.63 9.40 22.20 0.21 -1.43 15 12 C -0.39 -17.14 5.41 -19.54 -0.11 -17.25 15 13 C 0.53 20.18 2.80 71.24 0.20 20.38 15 14 F -0.19 -6.95 15.95 44.97 0.72 -6.23 15 15 F -0.19 -6.96 16.23 44.97 0.73 -6.23 15 16 F -0.19 -6.89 16.22 44.97 0.73 -6.16 15 17 C 0.29 12.63 6.58 38.16 0.25 12.89 15 18 N -0.60 -21.63 6.39 -51.49 -0.33 -21.96 15 19 N -0.60 -17.75 9.59 37.02 0.35 -17.40 15 20 C -0.30 -14.64 9.10 22.86 0.21 -14.43 15 21 H 0.29 13.02 8.30 -92.71 -0.77 12.25 15 22 H 0.11 5.81 6.18 -2.91 -0.02 5.79 15 23 H 0.12 4.98 7.13 -2.91 -0.02 4.95 15 24 H 0.40 13.02 6.22 -215.50 -1.34 11.68 15 25 H 0.37 7.77 9.21 -210.56 -1.94 5.83 15 26 H 0.34 9.68 8.43 -210.55 -1.77 7.91 15 27 H 0.11 5.13 7.02 -2.91 -0.02 5.11 15 Total: -1.00 -55.77 248.37 2.18 -53.59 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -3.78 Total: 32.39 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 1.49 Total: -26.18 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: 0.27 Total: -78.89 kcal Atomic # 9 Polarization: -20.80 SS G_CDS: 2.18 Total: -18.62 kcal Atomic # 14 Polarization: 35.69 SS G_CDS: 2.03 Total: 37.72 kcal Total: -55.77 2.18 -53.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047910.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.786 kcal (2) G-P(sol) polarization free energy of solvation -55.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds