Wall clock time and date at job start Mon Mar 30 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38293 * 119.96748 * 264.99791 * 10 9 7 12 12 C 1.38246 * 120.10925 * 180.02562 * 11 10 9 13 13 C 1.38169 * 120.05481 * 359.95724 * 12 11 10 14 14 C 1.38716 * 119.94385 * 0.02562 * 13 12 11 15 15 O 1.35899 * 120.05404 * 179.97438 * 14 13 12 16 16 C 1.38123 * 119.97462 * 84.72437 * 10 9 7 17 17 C 1.50697 * 120.02215 * 359.97438 * 16 10 9 18 18 F 1.39907 * 109.47132 * 90.00451 * 17 16 10 19 19 F 1.39903 * 109.46704 * 210.00089 * 17 16 10 20 20 F 1.39891 * 109.47625 * 330.00321 * 17 16 10 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08000 * 119.94792 * 359.97438 * 11 10 9 25 25 H 1.07989 * 119.97124 * 179.97438 * 12 11 10 26 26 H 1.07999 * 120.02946 * 180.02562 * 13 12 11 27 27 H 0.96703 * 114.00027 * 89.99785 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.5998 -4.2323 -1.2064 12 6 3.4975 -5.2836 -1.2144 13 6 4.0284 -5.7492 -0.0268 14 6 3.6595 -5.1612 1.1742 15 8 4.1799 -5.6177 2.3437 16 6 2.7621 -4.1030 1.1791 17 6 2.3640 -3.4577 2.4814 18 9 1.2422 -4.1117 3.0021 19 9 3.4227 -3.5516 3.3911 20 9 2.0575 -2.1108 2.2600 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1858 -3.8698 -2.1358 25 1 3.7843 -5.7410 -2.1496 26 1 4.7300 -6.5702 -0.0335 27 1 4.9997 -5.1779 2.6076 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396050346.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:10 Heat of formation + Delta-G solvation = -169.356705 kcal Electronic energy + Delta-G solvation = -18444.136793 eV Core-core repulsion = 14945.297386 eV Total energy + Delta-G solvation = -3498.839407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.30528 -46.89333 -46.61657 -39.51851 -36.66596 -33.45610 -31.71520 -30.16489 -27.39581 -25.10547 -23.44502 -21.78009 -20.75059 -17.99158 -17.70880 -17.35899 -17.31857 -16.38606 -15.34063 -15.19882 -14.55256 -14.44351 -13.75884 -13.49359 -13.25299 -13.12919 -12.85658 -12.78202 -12.55167 -12.21332 -11.84931 -11.69608 -11.34929 -11.00338 -10.77211 -10.43275 -10.28366 -9.63040 -9.55610 -8.67621 -8.44626 -8.12999 -6.07684 -4.08882 1.32941 1.65751 3.28182 3.36041 3.39884 3.49959 3.83397 4.32752 4.42493 4.51347 4.86902 5.21701 5.24574 5.30112 5.45543 5.66797 5.82682 5.95545 6.30184 6.53061 6.64461 6.75533 7.09675 7.40765 7.53171 7.77142 7.85225 8.18723 8.89934 9.51814 11.03033 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.009672 C = 0.008274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.378609 B = 2894.293391 C = 3383.412197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.058 0.942 9 C 0.036 3.964 10 C 0.027 3.973 11 C -0.137 4.137 12 C -0.077 4.077 13 C -0.178 4.178 14 C 0.148 3.852 15 O -0.496 6.496 16 C -0.217 4.217 17 C 0.505 3.495 18 F -0.189 7.189 19 F -0.193 7.193 20 F -0.132 7.132 21 H 0.262 0.738 22 H 0.040 0.960 23 H 0.035 0.965 24 H 0.132 0.868 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.270 -8.855 0.721 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.076 0.924 9 C -0.001 4.001 10 C 0.026 3.974 11 C -0.155 4.155 12 C -0.095 4.095 13 C -0.197 4.197 14 C 0.103 3.897 15 O -0.307 6.307 16 C -0.219 4.219 17 C 0.451 3.549 18 F -0.170 7.170 19 F -0.175 7.175 20 F -0.112 7.112 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.054 0.946 24 H 0.150 0.850 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 6.622 -9.084 0.764 11.268 hybrid contribution 0.815 1.273 0.260 1.533 sum 7.436 -7.812 1.024 10.834 Atomic orbital electron populations 1.69955 1.06000 1.26786 1.50197 1.24925 0.94850 0.99114 0.95129 0.86492 0.80121 0.83550 0.77665 1.19669 1.20933 1.20856 1.20862 0.92796 0.89162 1.50776 0.92423 1.18743 0.92546 0.89318 0.99491 1.20545 0.93203 0.93427 0.90193 1.21154 0.99340 0.96825 0.98178 1.21153 0.95343 0.95619 0.97432 1.21135 1.04122 1.03024 0.91385 1.18107 0.94134 0.91714 0.85728 1.84773 1.44703 1.63803 1.37420 1.20344 1.06914 1.00952 0.93671 1.18308 0.74300 0.78606 0.83731 1.93151 1.53839 1.81710 1.88314 1.93066 1.57785 1.96274 1.70339 1.93543 1.92442 1.31474 1.93782 0.92814 0.94160 0.94631 0.84961 0.85579 0.85398 0.75092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.14 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 15 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 7 C -0.50 -13.42 6.74 -34.44 -0.23 -13.66 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.04 0.89 4.37 -29.03 -0.13 0.76 15 10 C 0.03 0.56 5.05 -104.64 -0.53 0.03 15 11 C -0.14 -2.41 9.68 -39.56 -0.38 -2.79 15 12 C -0.08 -1.12 10.04 -39.60 -0.40 -1.51 15 13 C -0.18 -2.60 9.99 -39.43 -0.39 -3.00 15 14 C 0.15 2.52 6.59 -39.22 -0.26 2.26 15 15 O -0.50 -7.52 11.68 -19.42 -0.23 -7.74 15 16 C -0.22 -4.35 5.46 -104.48 -0.57 -4.92 15 17 C 0.50 10.62 2.83 36.00 0.10 10.73 15 18 F -0.19 -4.01 17.30 2.25 0.04 -3.97 15 19 F -0.19 -3.63 15.08 2.25 0.03 -3.60 15 20 F -0.13 -3.19 12.11 2.25 0.03 -3.16 15 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 22 H 0.04 1.09 6.43 -51.93 -0.33 0.75 15 23 H 0.04 0.91 8.05 -51.93 -0.42 0.50 15 24 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 25 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 26 H 0.13 1.50 8.06 -52.49 -0.42 1.08 15 27 H 0.39 4.30 8.67 45.56 0.40 4.69 15 LS Contribution 249.91 15.07 3.77 3.77 Total: -1.00 -30.18 249.91 -4.70 -34.87 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -1.17 Total: -0.84 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.89 Total: -10.49 kcal Atomic # 7 Polarization: -25.87 SS G_CDS: 0.74 Total: -25.14 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.23 Total: -7.74 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 0.10 Total: -10.74 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.18 -4.70 -34.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050346.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.483 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds