Wall clock time and date at job start Mon Mar 30 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86795 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47443 * 239.99683 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47198 * 119.99538 * 3 2 1 7 7 C 1.39927 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99696 * 162.66671 * 7 2 1 9 9 C 1.41405 * 120.00489 * 342.67444 * 7 2 1 10 10 C 1.40599 * 120.21247 * 154.87212 * 9 7 2 11 11 C 1.38282 * 119.67762 * 179.97438 * 10 9 7 12 12 N 1.39683 * 119.94999 * 179.97438 * 11 10 9 13 13 N 1.36597 * 120.00173 * 0.02562 * 12 11 10 14 14 C 1.39333 * 120.09387 * 0.02562 * 11 10 9 15 15 C 1.38470 * 120.42798 * 359.97438 * 14 11 10 16 16 C 1.50708 * 119.83793 * 179.97438 * 15 14 11 17 17 F 1.39895 * 109.47122 * 0.02562 * 16 15 14 18 18 F 1.39892 * 109.46810 * 120.00306 * 16 15 14 19 19 F 1.39901 * 109.47065 * 240.00135 * 16 15 14 20 20 C 1.37691 * 120.32589 * 0.02562 * 15 14 11 21 21 H 0.96996 * 120.00443 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.15823 * 0.28546 * 10 9 7 23 23 H 0.97002 * 119.99659 * 180.02562 * 12 11 10 24 24 H 1.00892 * 111.00432 * 56.04821 * 13 12 11 25 25 H 1.00906 * 110.99878 * 180.02562 * 13 12 11 26 26 H 1.08003 * 119.78230 * 179.97438 * 14 11 10 27 27 H 1.07996 * 120.05444 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2118 0.0005 8 1 3.0512 -1.2331 -0.2781 9 6 1.3491 -2.4085 0.3657 10 6 1.8175 -3.6468 -0.1076 11 6 1.1651 -4.8103 0.2569 12 7 1.6253 -6.0436 -0.2105 13 7 2.7192 -6.0997 -1.0265 14 6 0.0489 -4.7541 1.0889 15 6 -0.4160 -3.5368 1.5574 16 6 -1.6249 -3.4914 2.4561 17 9 -2.0951 -4.7912 2.6713 18 9 -1.2738 -2.9142 3.6811 19 9 -2.6277 -2.7265 1.8506 20 6 0.2203 -2.3675 1.2055 21 1 -0.4850 0.8400 -0.0004 22 1 2.6856 -3.6895 -0.7486 23 1 1.1679 -6.8601 0.0445 24 1 3.5154 -5.6550 -0.5951 25 1 2.9313 -7.0526 -1.2819 26 1 -0.4571 -5.6659 1.3701 27 1 -0.1462 -1.4205 1.5731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396050583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:05 Heat of formation + Delta-G solvation = -111.451071 kcal Electronic energy + Delta-G solvation = -17753.594462 eV Core-core repulsion = 14289.558783 eV Total energy + Delta-G solvation = -3464.035679 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.32052 -46.86969 -46.76101 -38.24370 -35.87578 -33.67180 -30.61491 -30.08032 -26.35604 -25.26006 -24.82983 -21.09709 -20.34650 -18.14214 -17.70820 -17.63849 -16.83185 -16.25081 -15.49430 -14.98703 -14.64741 -13.86460 -13.72321 -13.70162 -13.27003 -13.05674 -13.03551 -12.98424 -12.79268 -12.25940 -11.58319 -11.40034 -11.16724 -10.84980 -10.68315 -10.45945 -10.08944 -9.66868 -9.25033 -8.35730 -7.70702 -6.85491 -6.27476 -4.47299 2.48909 2.87717 3.05573 3.07448 3.19298 3.55112 3.78463 3.89096 4.46039 4.82367 5.02611 5.21828 5.51776 5.67683 6.30748 6.64596 6.73777 6.89386 7.04079 7.14635 7.20236 7.58141 7.66568 7.75931 7.97590 8.35941 8.50709 8.75328 8.80192 8.94812 10.10667 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.010420 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.927259 B = 2686.367235 C = 4131.870920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.136 3.864 10 C -0.256 4.256 11 C 0.236 3.764 12 N -0.614 5.614 13 N -0.599 5.599 14 C -0.273 4.273 15 C -0.127 4.127 16 C 0.506 3.494 17 F -0.192 7.192 18 F -0.189 7.189 19 F -0.183 7.183 20 C -0.145 4.145 21 H 0.285 0.715 22 H 0.106 0.894 23 H 0.391 0.609 24 H 0.327 0.673 25 H 0.341 0.659 26 H 0.101 0.899 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -5.404 2.055 5.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.484 4.484 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.281 4.281 11 C 0.137 3.863 12 N -0.342 5.342 13 N -0.223 5.223 14 C -0.297 4.297 15 C -0.129 4.129 16 C 0.452 3.548 17 F -0.173 7.173 18 F -0.170 7.170 19 F -0.164 7.164 20 C -0.166 4.166 21 H 0.096 0.904 22 H 0.124 0.876 23 H 0.227 0.773 24 H 0.141 0.859 25 H 0.153 0.847 26 H 0.119 0.881 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.698 -4.758 1.456 5.024 hybrid contribution 0.409 -0.252 0.904 1.024 sum 1.106 -5.009 2.361 5.647 Atomic orbital electron populations 1.69804 1.07618 1.29823 1.33641 1.25969 0.94777 1.01550 0.92117 0.86309 0.80127 0.79953 0.80054 1.18888 1.20227 1.18698 1.19544 0.98083 0.90851 1.39903 0.89988 1.17269 0.89963 0.91969 0.87544 1.20563 1.06440 0.90913 1.10168 1.17093 0.92775 0.83902 0.92569 1.43100 1.28227 1.06090 1.56768 1.60126 1.02357 1.22146 1.37629 1.19322 1.03005 0.95561 1.11796 1.19202 0.95533 0.96395 1.01795 1.18738 0.84496 0.72393 0.79163 1.93065 1.90148 1.38844 1.95290 1.93133 1.92130 1.84907 1.46848 1.93168 1.63842 1.76142 1.83251 1.20992 0.99190 0.95340 1.01040 0.90417 0.87624 0.77306 0.85883 0.84721 0.88118 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.99 10.97 55.55 0.61 -19.38 15 2 C 0.08 1.84 5.14 -17.34 -0.09 1.75 15 3 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 15 4 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.42 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 7 C -0.45 -11.66 9.05 -37.75 -0.34 -12.00 15 8 H 0.08 2.00 7.90 -52.48 -0.41 1.58 15 9 C 0.14 3.53 5.57 -106.85 -0.59 2.93 15 10 C -0.26 -6.11 9.10 -38.68 -0.35 -6.46 15 11 C 0.24 5.12 6.69 -83.86 -0.56 4.56 15 12 N -0.61 -10.60 6.66 32.37 0.22 -10.39 15 13 N -0.60 -8.89 9.59 60.35 0.58 -8.32 15 14 C -0.27 -6.02 9.29 -39.09 -0.36 -6.38 15 15 C -0.13 -2.99 5.36 -104.73 -0.56 -3.55 15 16 C 0.51 10.85 3.31 36.01 0.12 10.97 15 17 F -0.19 -3.79 15.95 2.25 0.04 -3.76 15 18 F -0.19 -3.96 17.23 2.25 0.04 -3.92 15 19 F -0.18 -4.01 17.23 2.25 0.04 -3.97 15 20 C -0.15 -3.73 8.22 -38.83 -0.32 -4.05 15 21 H 0.28 6.63 8.30 -40.82 -0.34 6.29 15 22 H 0.11 2.41 7.02 -52.49 -0.37 2.05 15 23 H 0.39 5.72 8.84 -185.16 -1.64 4.09 15 24 H 0.33 4.70 8.42 -181.38 -1.53 3.17 15 25 H 0.34 3.70 9.21 -181.36 -1.67 2.03 15 26 H 0.10 2.01 7.13 -52.48 -0.37 1.64 15 27 H 0.13 3.35 6.18 -52.49 -0.32 3.03 15 LS Contribution 253.26 15.07 3.82 3.82 Total: -1.00 -27.50 253.26 -8.21 -35.71 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -5.45 Total: 9.28 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.06 Total: -12.22 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 1.40 Total: -38.09 kcal Atomic # 9 Polarization: -11.76 SS G_CDS: 0.11 Total: -11.65 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.50 -8.21 -35.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.742 kcal (2) G-P(sol) polarization free energy of solvation -27.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds