Wall clock time and date at job start Mon Mar 30 2020 06:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86795 * 119.99949 * 2 1 4 4 H 1.48503 * 109.47443 * 239.99683 * 3 2 1 5 5 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47198 * 119.99538 * 3 2 1 7 7 C 1.39927 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99696 * 162.66671 * 7 2 1 9 9 C 1.41405 * 120.00489 * 342.67444 * 7 2 1 10 10 C 1.40599 * 120.21247 * 154.87212 * 9 7 2 11 11 C 1.38282 * 119.67762 * 179.97438 * 10 9 7 12 12 N 1.39683 * 119.94999 * 179.97438 * 11 10 9 13 13 N 1.36597 * 120.00173 * 0.02562 * 12 11 10 14 14 C 1.39333 * 120.09387 * 0.02562 * 11 10 9 15 15 C 1.38470 * 120.42798 * 359.97438 * 14 11 10 16 16 C 1.50708 * 119.83793 * 179.97438 * 15 14 11 17 17 F 1.39895 * 109.47122 * 0.02562 * 16 15 14 18 18 F 1.39892 * 109.46810 * 120.00306 * 16 15 14 19 19 F 1.39901 * 109.47065 * 240.00135 * 16 15 14 20 20 C 1.37691 * 120.32589 * 0.02562 * 15 14 11 21 21 H 0.96996 * 120.00443 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.15823 * 0.28546 * 10 9 7 23 23 H 0.97002 * 119.99659 * 180.02562 * 12 11 10 24 24 H 1.00892 * 111.00432 * 56.04821 * 13 12 11 25 25 H 1.00906 * 110.99878 * 180.02562 * 13 12 11 26 26 H 1.08003 * 119.78230 * 179.97438 * 14 11 10 27 27 H 1.07996 * 120.05444 * 179.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0080 -1.2118 0.0005 8 1 3.0512 -1.2331 -0.2781 9 6 1.3491 -2.4085 0.3657 10 6 1.8175 -3.6468 -0.1076 11 6 1.1651 -4.8103 0.2569 12 7 1.6253 -6.0436 -0.2105 13 7 2.7192 -6.0997 -1.0265 14 6 0.0489 -4.7541 1.0889 15 6 -0.4160 -3.5368 1.5574 16 6 -1.6249 -3.4914 2.4561 17 9 -2.0951 -4.7912 2.6713 18 9 -1.2738 -2.9142 3.6811 19 9 -2.6277 -2.7265 1.8506 20 6 0.2203 -2.3675 1.2055 21 1 -0.4850 0.8400 -0.0004 22 1 2.6856 -3.6895 -0.7486 23 1 1.1679 -6.8601 0.0445 24 1 3.5154 -5.6550 -0.5951 25 1 2.9313 -7.0526 -1.2819 26 1 -0.4571 -5.6659 1.3701 27 1 -0.1462 -1.4205 1.5731 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396050583.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:05 Heat of formation + Delta-G solvation = -128.065112 kcal Electronic energy + Delta-G solvation = -17754.314901 eV Core-core repulsion = 14289.558783 eV Total energy + Delta-G solvation = -3464.756118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.03049 -48.54399 -48.49662 -39.95260 -37.42753 -35.45938 -32.42468 -31.72640 -27.98463 -27.03949 -26.57550 -22.87379 -22.09188 -19.84580 -19.37224 -19.35776 -18.35440 -18.03432 -16.97384 -16.71997 -16.42837 -15.46123 -15.42212 -15.30066 -14.96622 -14.80234 -14.75135 -14.69240 -14.49538 -13.91729 -13.27536 -13.15433 -12.80213 -12.64676 -12.29352 -12.12286 -11.83844 -11.46978 -11.03800 -9.89985 -9.56756 -8.66392 -7.82094 -6.38918 0.66188 1.10614 1.42169 1.53391 1.57254 1.84665 2.22345 2.37701 2.65701 3.06237 3.32650 3.43266 3.80324 4.35994 4.57548 4.86448 4.96193 5.10669 5.29508 5.41492 5.65696 5.80866 5.85700 6.05272 6.20433 6.54530 6.80662 6.90670 7.05723 7.59335 8.31844 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016535 B = 0.010420 C = 0.006775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.927259 B = 2686.367235 C = 4131.870920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.110 3.890 10 C -0.271 4.271 11 C 0.242 3.758 12 N -0.602 5.602 13 N -0.608 5.608 14 C -0.271 4.271 15 C -0.133 4.133 16 C 0.513 3.487 17 F -0.178 7.178 18 F -0.186 7.186 19 F -0.187 7.187 20 C -0.175 4.175 21 H 0.290 0.710 22 H 0.110 0.890 23 H 0.407 0.593 24 H 0.334 0.666 25 H 0.366 0.634 26 H 0.126 0.874 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -6.357 1.921 6.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.518 4.518 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.296 4.296 11 C 0.140 3.860 12 N -0.328 5.328 13 N -0.235 5.235 14 C -0.295 4.295 15 C -0.135 4.135 16 C 0.459 3.541 17 F -0.159 7.159 18 F -0.168 7.168 19 F -0.168 7.168 20 C -0.196 4.196 21 H 0.101 0.899 22 H 0.128 0.872 23 H 0.246 0.754 24 H 0.148 0.852 25 H 0.181 0.819 26 H 0.144 0.856 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.228 -5.791 1.311 6.063 hybrid contribution 0.249 -0.156 0.915 0.961 sum 1.477 -5.947 2.226 6.519 Atomic orbital electron populations 1.69874 1.09125 1.30931 1.34536 1.26816 0.95443 1.04727 0.91067 0.85229 0.78757 0.75439 0.80201 1.18099 1.19446 1.18341 1.19826 0.98453 0.91945 1.41584 0.89795 1.17606 0.90526 0.93116 0.88028 1.20655 1.07028 0.91164 1.10729 1.17131 0.92143 0.85010 0.91746 1.42956 1.28768 1.05159 1.55898 1.59982 1.01898 1.24447 1.37216 1.19632 1.02931 0.95905 1.11062 1.19436 0.95890 0.96399 1.01770 1.18446 0.83845 0.72872 0.78924 1.93088 1.89906 1.37767 1.95183 1.93136 1.92124 1.84963 1.46544 1.93160 1.63858 1.76380 1.83407 1.20837 1.00524 0.95341 1.02920 0.89937 0.87232 0.75403 0.85190 0.81854 0.85593 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.86 10.97 21.82 0.24 -42.62 15 2 C 0.04 1.76 5.14 85.25 0.44 2.20 15 3 Si 0.98 37.49 29.59 68.60 2.03 39.52 15 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 5 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 15 7 C -0.49 -25.69 9.05 23.46 0.21 -25.48 15 8 H 0.08 4.18 7.90 -2.91 -0.02 4.16 15 9 C 0.11 5.86 5.57 -21.31 -0.12 5.74 15 10 C -0.27 -12.87 9.10 22.86 0.21 -12.66 15 11 C 0.24 10.13 6.69 38.16 0.26 10.38 15 12 N -0.60 -19.06 6.66 -51.49 -0.34 -19.40 15 13 N -0.61 -16.41 9.59 37.02 0.36 -16.05 15 14 C -0.27 -11.50 9.29 22.59 0.21 -11.29 15 15 C -0.13 -6.21 5.36 -19.94 -0.11 -6.31 15 16 C 0.51 21.62 3.31 71.24 0.24 21.85 15 17 F -0.18 -6.67 15.95 44.97 0.72 -5.96 15 18 F -0.19 -7.72 17.23 44.97 0.77 -6.95 15 19 F -0.19 -8.14 17.23 44.97 0.77 -7.37 15 20 C -0.18 -9.22 8.22 22.76 0.19 -9.03 15 21 H 0.29 13.81 8.30 -92.71 -0.77 13.04 15 22 H 0.11 4.98 7.02 -2.91 -0.02 4.96 15 23 H 0.41 10.45 8.84 -215.50 -1.91 8.55 15 24 H 0.33 8.81 8.42 -210.57 -1.77 7.04 15 25 H 0.37 6.74 9.21 -210.55 -1.94 4.80 15 26 H 0.13 4.64 7.13 -2.91 -0.02 4.62 15 27 H 0.11 5.85 6.18 -2.91 -0.02 5.83 15 Total: -1.00 -58.93 253.26 1.72 -57.21 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -4.35 Total: 26.22 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 1.52 Total: -24.61 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: 0.25 Total: -78.07 kcal Atomic # 9 Polarization: -22.54 SS G_CDS: 2.27 Total: -20.27 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 2.03 Total: 39.52 kcal Total: -58.93 1.72 -57.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396050583.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.855 kcal (2) G-P(sol) polarization free energy of solvation -58.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds