Wall clock time and date at job start Mon Mar 30 2020 06:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86803 * 120.00320 * 2 1 4 4 H 1.48497 * 109.47176 * 240.00193 * 3 2 1 5 5 H 1.48502 * 109.46879 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47108 * 119.99939 * 3 2 1 7 7 C 1.39933 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00238 * 194.31941 * 7 2 1 9 9 C 1.41046 * 119.99747 * 14.33203 * 7 2 1 10 10 C 1.40731 * 120.30969 * 30.47589 * 9 7 2 11 11 C 1.36444 * 119.94691 * 180.29399 * 10 9 7 12 12 C 1.38902 * 120.60227 * 359.44246 * 11 10 9 13 13 C 1.38172 * 120.62117 * 0.26701 * 12 11 10 14 14 C 1.50698 * 119.98511 * 179.97438 * 13 12 11 15 15 F 1.39898 * 109.47120 * 356.82766 * 14 13 12 16 16 F 1.39905 * 109.46986 * 116.82428 * 14 13 12 17 17 F 1.39896 * 109.47517 * 236.82426 * 14 13 12 18 18 C 1.38746 * 120.02496 * 0.03110 * 13 12 11 19 19 N 1.38745 * 120.29183 * 179.97438 * 18 13 12 20 20 N 1.45395 * 111.00086 * 215.63326 * 19 18 13 21 21 H 0.97002 * 119.99659 * 0.02562 * 1 2 3 22 22 H 1.07992 * 120.02627 * 0.02562 * 10 9 7 23 23 H 1.07999 * 119.69851 * 179.71244 * 11 10 9 24 24 H 1.07998 * 119.69247 * 180.29594 * 12 11 10 25 25 H 1.00904 * 110.99613 * 91.67595 * 19 18 13 26 26 H 1.00900 * 110.99813 * 65.80594 * 20 19 18 27 27 H 1.00902 * 110.99658 * 189.76001 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0966 1.6964 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0966 1.6963 1.2125 7 6 2.0084 -1.2119 0.0005 8 1 3.0632 -1.2263 0.2319 9 6 1.3360 -2.4144 -0.3013 10 6 0.2369 -2.4123 -1.1802 11 6 -0.4119 -3.5790 -1.4623 12 6 0.0092 -4.7765 -0.8983 13 6 1.0892 -4.8075 -0.0370 14 6 1.5334 -6.1146 0.5673 15 9 0.6617 -7.1332 0.1677 16 9 2.8294 -6.4127 0.1325 17 9 1.5218 -6.0113 1.9623 18 6 1.7640 -3.6354 0.2727 19 7 2.8488 -3.6600 1.1373 20 7 2.8881 -2.4607 1.9584 21 1 -0.4850 0.8401 -0.0004 22 1 -0.0955 -1.4873 -1.6275 23 1 -1.2578 -3.5720 -2.1337 24 1 -0.5121 -5.6921 -1.1355 25 1 3.7129 -3.7794 0.6300 26 1 2.0962 -2.4238 2.5826 27 1 3.7554 -2.4014 2.4706 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396051753.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:07 Heat of formation + Delta-G solvation = -113.618614 kcal Electronic energy + Delta-G solvation = -18247.588161 eV Core-core repulsion = 14783.458491 eV Total energy + Delta-G solvation = -3464.129671 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.91278 -48.46006 -48.34587 -39.95925 -36.17096 -35.57241 -32.28686 -31.15998 -28.59627 -26.63233 -25.98419 -22.59901 -22.02921 -19.65655 -19.26084 -19.13289 -18.16579 -17.56536 -17.00831 -16.52347 -15.74884 -15.34536 -15.26440 -15.02322 -14.90531 -14.82909 -14.57489 -14.53614 -14.20171 -13.58706 -13.42159 -12.99638 -12.79696 -12.56499 -12.35298 -12.10383 -11.61238 -11.23109 -10.98963 -9.54164 -9.51931 -8.60486 -8.18082 -6.12551 0.65327 0.88597 1.45898 1.54677 1.55974 1.96844 2.27950 2.72860 2.92662 3.13849 3.40818 3.52783 3.82000 4.51172 4.61481 4.86457 5.03380 5.23180 5.42069 5.46123 5.62213 5.91171 6.05028 6.17900 6.23524 6.66954 6.81017 6.94032 7.00324 7.07497 8.42498 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.034655 B = 0.008411 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.763173 B = 3328.139345 C = 3857.600636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.980 3.020 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.096 0.904 9 C 0.066 3.934 10 C -0.156 4.156 11 C -0.111 4.111 12 C -0.202 4.202 13 C -0.151 4.151 14 C 0.522 3.478 15 F -0.186 7.186 16 F -0.184 7.184 17 F -0.182 7.182 18 C -0.003 4.003 19 N -0.473 5.473 20 N -0.665 5.665 21 H 0.284 0.716 22 H 0.103 0.897 23 H 0.121 0.879 24 H 0.126 0.874 25 H 0.344 0.656 26 H 0.345 0.655 27 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -3.725 0.898 4.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.803 3.197 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.442 4.442 8 H 0.114 0.886 9 C 0.060 3.940 10 C -0.177 4.177 11 C -0.129 4.129 12 C -0.222 4.222 13 C -0.155 4.155 14 C 0.468 3.532 15 F -0.168 7.168 16 F -0.165 7.165 17 F -0.163 7.163 18 C -0.101 4.101 19 N -0.193 5.193 20 N -0.286 5.286 21 H 0.094 0.906 22 H 0.121 0.879 23 H 0.139 0.861 24 H 0.144 0.856 25 H 0.167 0.833 26 H 0.157 0.843 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.685 -3.581 0.756 4.540 hybrid contribution 0.436 0.534 0.357 0.776 sum 3.121 -3.048 1.113 4.502 Atomic orbital electron populations 1.69887 1.08874 1.30222 1.36790 1.26679 0.95274 1.04134 0.92120 0.85273 0.78537 0.76226 0.79707 1.19165 1.20490 1.18463 1.19675 0.97768 0.89805 1.36933 0.88623 1.18286 0.92951 0.93195 0.89551 1.21150 0.99405 0.97026 1.00082 1.20645 0.99692 0.92307 1.00303 1.20344 0.99481 0.98547 1.03822 1.19527 1.00916 0.90323 1.04713 1.18215 0.74328 0.84736 0.75921 1.93086 1.69909 1.63130 1.90667 1.93124 1.39585 1.94266 1.89564 1.93139 1.96217 1.96345 1.30594 1.18451 0.99698 0.92571 0.99419 1.60441 1.04829 1.30471 1.23567 1.62022 1.07672 1.30697 1.28235 0.90594 0.87917 0.86120 0.85645 0.83346 0.84294 0.84271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.16 11.16 21.83 0.24 -40.92 15 2 C 0.03 1.49 5.17 85.25 0.44 1.93 15 3 Si 0.98 36.72 29.58 68.60 2.03 38.75 15 4 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 5 H -0.28 -10.27 7.11 99.48 0.71 -9.56 15 6 H -0.26 -9.48 7.11 99.48 0.71 -8.77 15 7 C -0.41 -19.97 6.98 23.37 0.16 -19.81 15 8 H 0.10 4.50 6.54 -2.91 -0.02 4.48 15 9 C 0.07 3.25 5.46 -21.17 -0.12 3.14 15 10 C -0.16 -7.68 8.59 22.46 0.19 -7.49 15 11 C -0.11 -4.84 9.96 22.01 0.22 -4.62 15 12 C -0.20 -8.50 9.43 22.41 0.21 -8.29 15 13 C -0.15 -6.54 5.39 -19.76 -0.11 -6.64 15 14 C 0.52 20.26 2.97 71.24 0.21 20.47 15 15 F -0.19 -6.77 15.97 44.97 0.72 -6.05 15 16 F -0.18 -6.85 17.07 44.97 0.77 -6.09 15 17 F -0.18 -7.17 16.71 44.97 0.75 -6.42 15 18 C 0.00 -0.11 6.09 38.98 0.24 0.12 15 19 N -0.47 -18.70 6.34 -50.39 -0.32 -19.02 15 20 N -0.66 -24.62 6.65 37.02 0.25 -24.38 15 21 H 0.28 13.01 8.30 -92.71 -0.77 12.24 15 22 H 0.10 5.27 6.49 -2.91 -0.02 5.25 15 23 H 0.12 4.54 8.06 -2.91 -0.02 4.52 15 24 H 0.13 4.66 7.14 -2.91 -0.02 4.64 15 25 H 0.34 12.79 9.00 -204.85 -1.84 10.95 15 26 H 0.35 13.38 9.20 -204.85 -1.89 11.50 15 27 H 0.34 10.29 9.24 -204.85 -1.89 8.40 15 Total: -1.00 -52.41 248.80 1.54 -50.87 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -4.35 Total: 34.45 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: 1.45 Total: -21.18 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: 0.17 Total: -84.32 kcal Atomic # 9 Polarization: -20.80 SS G_CDS: 2.24 Total: -18.56 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.75 kcal Total: -52.41 1.54 -50.87 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396051753.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.751 kcal (2) G-P(sol) polarization free energy of solvation -52.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds