Wall clock time and date at job start Mon Mar 30 2020 06:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46900 * 90.00376 * 3 2 1 5 5 H 1.48504 * 109.46932 * 210.00270 * 3 2 1 6 6 H 1.48498 * 109.47148 * 330.00372 * 3 2 1 7 7 C 1.39859 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00378 * 17.45011 * 7 2 1 9 9 C 1.41141 * 119.99704 * 197.44868 * 7 2 1 10 10 C 1.40898 * 120.15631 * 29.20561 * 9 7 2 11 11 C 1.36325 * 119.83855 * 179.76339 * 10 9 7 12 12 C 1.39593 * 120.15415 * 0.51376 * 11 10 9 13 13 N 1.38862 * 119.83811 * 179.75494 * 12 11 10 14 14 N 1.36602 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.39543 * 120.32086 * 359.74156 * 12 11 10 16 16 C 1.36356 * 120.15859 * 359.97438 * 15 12 11 17 17 C 1.50704 * 120.08402 * 179.97438 * 16 15 12 18 18 F 1.39908 * 109.46762 * 0.02562 * 17 16 15 19 19 F 1.39900 * 109.46868 * 120.01823 * 17 16 15 20 20 F 1.39896 * 109.47469 * 240.02084 * 17 16 15 21 21 H 0.96996 * 119.99755 * 175.45957 * 1 2 3 22 22 H 1.07997 * 120.08125 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.92614 * 180.23575 * 11 10 9 24 24 H 0.97000 * 119.99511 * 179.97438 * 13 12 11 25 25 H 1.00897 * 110.99819 * 179.97438 * 14 13 12 26 26 H 1.00900 * 110.99181 * 303.94967 * 14 13 12 27 27 H 1.08002 * 119.92415 * 180.02562 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5406 1.4403 -0.7001 6 1 1.4404 2.6527 -0.6999 7 6 2.0084 -1.2112 -0.0005 8 1 1.5057 -2.1249 -0.2814 9 6 3.3711 -1.2395 0.3660 10 6 3.8789 -0.2919 1.2767 11 6 5.1951 -0.3281 1.6299 12 6 6.0414 -1.2943 1.0833 13 7 7.3821 -1.3220 1.4438 14 7 7.8700 -0.4050 2.3309 15 6 5.5466 -2.2326 0.1767 16 6 4.2311 -2.2118 -0.1813 17 6 3.6986 -3.2256 -1.1610 18 9 4.7346 -4.0769 -1.5604 19 9 2.6871 -3.9760 -0.5521 20 9 3.1801 -2.5652 -2.2800 21 1 -0.4849 -0.8374 -0.0665 22 1 3.2261 0.4587 1.6972 23 1 5.5849 0.3951 2.3308 24 1 7.9722 -1.9927 1.0657 25 1 8.8550 -0.5493 2.4952 26 1 7.6901 0.5359 2.0139 27 1 6.2071 -2.9776 -0.2420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396055000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:30 Heat of formation + Delta-G solvation = -108.812075 kcal Electronic energy + Delta-G solvation = -18126.917449 eV Core-core repulsion = 14662.996206 eV Total energy + Delta-G solvation = -3463.921244 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.13874 -46.72476 -46.50443 -38.60379 -36.10181 -33.58207 -30.80027 -30.62795 -27.46983 -25.06674 -23.56458 -21.77273 -20.18116 -18.40292 -17.79857 -17.45652 -17.42735 -16.78006 -15.59282 -14.66730 -14.34364 -14.02720 -13.88928 -13.54165 -13.43913 -13.07368 -12.83232 -12.76865 -12.62816 -12.44062 -12.27274 -11.52414 -11.11755 -10.92724 -10.58415 -10.31028 -9.99638 -9.41475 -9.12695 -8.41693 -8.12942 -7.39876 -6.62835 -4.47583 2.22131 2.62272 3.15974 3.32264 3.49777 3.62939 3.85630 3.98492 4.41547 5.01483 5.11278 5.22397 5.42339 5.64003 5.83059 6.06956 6.50041 6.55882 6.74531 6.99762 7.10960 7.28939 7.50066 7.56662 7.66315 8.12621 8.32699 8.47182 8.68295 8.80293 9.97700 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.013072 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.440343 B = 2141.483419 C = 3445.444162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.044 3.956 3 Si 1.072 2.928 4 H -0.275 1.275 5 H -0.262 1.262 6 H -0.288 1.288 7 C -0.510 4.510 8 H 0.086 0.914 9 C 0.104 3.896 10 C -0.202 4.202 11 C -0.098 4.098 12 C 0.089 3.911 13 N -0.615 5.615 14 N -0.600 5.600 15 C -0.096 4.096 16 C -0.264 4.264 17 C 0.523 3.477 18 F -0.201 7.201 19 F -0.189 7.189 20 F -0.182 7.182 21 H 0.288 0.712 22 H 0.116 0.884 23 H 0.109 0.891 24 H 0.391 0.609 25 H 0.342 0.658 26 H 0.321 0.679 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.090 -0.319 0.260 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.176 4.176 3 Si 0.898 3.102 4 H -0.202 1.202 5 H -0.186 1.186 6 H -0.215 1.215 7 C -0.539 4.539 8 H 0.104 0.896 9 C 0.100 3.900 10 C -0.221 4.221 11 C -0.120 4.120 12 C -0.008 4.008 13 N -0.346 5.346 14 N -0.223 5.223 15 C -0.119 4.119 16 C -0.268 4.268 17 C 0.469 3.531 18 F -0.183 7.183 19 F -0.170 7.170 20 F -0.163 7.163 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.127 0.873 24 H 0.227 0.773 25 H 0.154 0.846 26 H 0.135 0.865 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.221 1.070 0.898 9.326 hybrid contribution 0.937 -1.910 -1.053 2.374 sum 10.159 -0.840 -0.156 10.194 Atomic orbital electron populations 1.70547 1.08006 1.33228 1.31376 1.27266 0.95677 1.04350 0.90341 0.83626 0.75727 0.73078 0.77786 1.20209 1.18646 1.21512 1.20741 0.94798 0.97435 1.40900 0.89636 1.17255 0.92804 0.90070 0.89893 1.20795 0.95303 1.03488 1.02486 1.20129 0.93335 0.98322 1.00171 1.16880 0.82885 0.99731 1.01325 1.42521 1.06757 1.33329 1.51950 1.60222 1.20352 1.02694 1.39007 1.19517 0.94335 0.98870 0.99208 1.19049 0.94767 1.05312 1.07674 1.18231 0.74502 0.79963 0.80396 1.93036 1.59641 1.73624 1.91962 1.93115 1.62266 1.78355 1.83278 1.93144 1.87477 1.80841 1.54861 0.90059 0.86678 0.87276 0.77315 0.84625 0.86519 0.87517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.59 13.66 55.54 0.76 -20.83 15 2 C 0.04 1.14 5.41 -17.34 -0.09 1.05 15 3 Si 1.07 23.71 24.90 -169.99 -4.23 19.48 15 4 H -0.28 -5.67 6.44 56.52 0.36 -5.31 15 5 H -0.26 -5.74 7.03 56.52 0.40 -5.35 15 6 H -0.29 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.51 -13.59 8.12 -37.87 -0.31 -13.90 15 8 H 0.09 2.40 6.32 -52.49 -0.33 2.07 15 9 C 0.10 2.61 5.11 -106.79 -0.55 2.06 15 10 C -0.20 -4.66 7.20 -39.26 -0.28 -4.94 15 11 C -0.10 -2.02 9.28 -39.77 -0.37 -2.39 15 12 C 0.09 1.75 6.71 -83.69 -0.56 1.19 15 13 N -0.62 -9.56 6.62 32.51 0.22 -9.35 15 14 N -0.60 -7.80 9.57 60.35 0.58 -7.23 15 15 C -0.10 -1.98 9.22 -39.77 -0.37 -2.35 15 16 C -0.26 -6.18 5.39 -104.30 -0.56 -6.74 15 17 C 0.52 11.81 2.84 36.01 0.10 11.91 15 18 F -0.20 -4.07 15.96 2.25 0.04 -4.04 15 19 F -0.19 -4.39 15.67 2.25 0.04 -4.36 15 20 F -0.18 -4.25 16.54 2.25 0.04 -4.22 15 21 H 0.29 7.54 8.73 -40.82 -0.36 7.19 15 22 H 0.12 2.61 4.42 -52.49 -0.23 2.38 15 23 H 0.11 2.01 7.00 -52.49 -0.37 1.64 15 24 H 0.39 5.18 8.83 -185.15 -1.63 3.54 15 25 H 0.34 3.23 9.21 -181.37 -1.67 1.56 15 26 H 0.32 3.98 8.40 -181.36 -1.52 2.45 15 27 H 0.11 1.96 7.12 -52.49 -0.37 1.59 15 LS Contribution 242.79 15.07 3.66 3.66 Total: -1.00 -27.81 242.79 -7.23 -35.04 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.33 Total: 5.95 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -2.99 Total: -14.11 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 1.55 Total: -37.41 kcal Atomic # 9 Polarization: -12.71 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.23 Total: 19.48 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -27.81 -7.23 -35.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396055000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.771 kcal (2) G-P(sol) polarization free energy of solvation -27.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds