Wall clock time and date at job start Mon Mar 30 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30910 * 1 3 3 Si 1.86804 * 119.99710 * 2 1 4 4 H 1.48500 * 109.46900 * 90.00376 * 3 2 1 5 5 H 1.48504 * 109.46932 * 210.00270 * 3 2 1 6 6 H 1.48498 * 109.47148 * 330.00372 * 3 2 1 7 7 C 1.39859 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00378 * 17.45011 * 7 2 1 9 9 C 1.41141 * 119.99704 * 197.44868 * 7 2 1 10 10 C 1.40898 * 120.15631 * 29.20561 * 9 7 2 11 11 C 1.36325 * 119.83855 * 179.76339 * 10 9 7 12 12 C 1.39593 * 120.15415 * 0.51376 * 11 10 9 13 13 N 1.38862 * 119.83811 * 179.75494 * 12 11 10 14 14 N 1.36602 * 120.00227 * 359.97438 * 13 12 11 15 15 C 1.39543 * 120.32086 * 359.74156 * 12 11 10 16 16 C 1.36356 * 120.15859 * 359.97438 * 15 12 11 17 17 C 1.50704 * 120.08402 * 179.97438 * 16 15 12 18 18 F 1.39908 * 109.46762 * 0.02562 * 17 16 15 19 19 F 1.39900 * 109.46868 * 120.01823 * 17 16 15 20 20 F 1.39896 * 109.47469 * 240.02084 * 17 16 15 21 21 H 0.96996 * 119.99755 * 175.45957 * 1 2 3 22 22 H 1.07997 * 120.08125 * 0.02562 * 10 9 7 23 23 H 1.07997 * 119.92614 * 180.23575 * 11 10 9 24 24 H 0.97000 * 119.99511 * 179.97438 * 13 12 11 25 25 H 1.00897 * 110.99819 * 179.97438 * 14 13 12 26 26 H 1.00900 * 110.99181 * 303.94967 * 14 13 12 27 27 H 1.08002 * 119.92415 * 180.02562 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4906 2.0464 1.4001 5 1 3.5406 1.4403 -0.7001 6 1 1.4404 2.6527 -0.6999 7 6 2.0084 -1.2112 -0.0005 8 1 1.5057 -2.1249 -0.2814 9 6 3.3711 -1.2395 0.3660 10 6 3.8789 -0.2919 1.2767 11 6 5.1951 -0.3281 1.6299 12 6 6.0414 -1.2943 1.0833 13 7 7.3821 -1.3220 1.4438 14 7 7.8700 -0.4050 2.3309 15 6 5.5466 -2.2326 0.1767 16 6 4.2311 -2.2118 -0.1813 17 6 3.6986 -3.2256 -1.1610 18 9 4.7346 -4.0769 -1.5604 19 9 2.6871 -3.9760 -0.5521 20 9 3.1801 -2.5652 -2.2800 21 1 -0.4849 -0.8374 -0.0665 22 1 3.2261 0.4587 1.6972 23 1 5.5849 0.3951 2.3308 24 1 7.9722 -1.9927 1.0657 25 1 8.8550 -0.5493 2.4952 26 1 7.6901 0.5359 2.0139 27 1 6.2071 -2.9776 -0.2420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396055000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:29 Heat of formation + Delta-G solvation = -127.465058 kcal Electronic energy + Delta-G solvation = -18127.726303 eV Core-core repulsion = 14662.996206 eV Total energy + Delta-G solvation = -3464.730098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.94037 -48.48910 -48.35906 -40.24919 -37.55331 -35.37081 -32.52900 -32.24289 -29.01088 -26.74840 -25.27763 -23.52572 -21.90141 -20.23300 -19.39546 -19.25257 -19.15765 -18.19750 -17.04971 -16.32100 -16.06367 -15.75257 -15.41959 -15.29931 -15.22937 -14.86461 -14.60879 -14.59769 -14.35934 -14.14304 -13.86863 -13.28889 -12.84914 -12.56102 -12.18915 -12.01475 -11.73342 -11.25501 -10.86645 -9.95335 -9.83990 -9.30767 -8.13838 -6.34515 0.47477 0.86855 1.39906 1.58461 1.78502 1.98140 2.22187 2.45059 2.63000 3.22722 3.25845 3.46164 3.81342 4.13643 4.37604 4.47844 4.86128 4.88616 5.19732 5.37103 5.46926 5.58471 5.75958 5.86769 6.03623 6.32244 6.46531 6.80057 7.02903 7.62154 8.03499 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.013072 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.440343 B = 2141.483419 C = 3445.444162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.010 3.990 3 Si 1.101 2.899 4 H -0.249 1.249 5 H -0.259 1.259 6 H -0.284 1.284 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.077 3.923 10 C -0.206 4.206 11 C -0.104 4.104 12 C 0.120 3.880 13 N -0.603 5.603 14 N -0.607 5.607 15 C -0.110 4.110 16 C -0.269 4.269 17 C 0.521 3.479 18 F -0.185 7.185 19 F -0.197 7.197 20 F -0.190 7.190 21 H 0.275 0.725 22 H 0.117 0.883 23 H 0.138 0.862 24 H 0.406 0.594 25 H 0.366 0.634 26 H 0.332 0.668 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.659 0.400 1.264 13.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.204 4.204 3 Si 0.922 3.078 4 H -0.174 1.174 5 H -0.184 1.184 6 H -0.211 1.211 7 C -0.573 4.573 8 H 0.070 0.930 9 C 0.073 3.927 10 C -0.225 4.225 11 C -0.126 4.126 12 C 0.020 3.980 13 N -0.332 5.332 14 N -0.234 5.234 15 C -0.134 4.134 16 C -0.272 4.272 17 C 0.468 3.532 18 F -0.166 7.166 19 F -0.178 7.178 20 F -0.171 7.171 21 H 0.086 0.914 22 H 0.134 0.866 23 H 0.156 0.844 24 H 0.245 0.755 25 H 0.181 0.819 26 H 0.146 0.854 27 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.864 1.760 1.921 13.125 hybrid contribution 0.189 -2.267 -1.295 2.617 sum 13.054 -0.506 0.625 13.078 Atomic orbital electron populations 1.70632 1.08623 1.32333 1.35206 1.28329 0.95772 1.06805 0.89445 0.83296 0.74849 0.70375 0.79300 1.17401 1.18362 1.21103 1.20601 0.96086 0.96645 1.44010 0.92955 1.17423 0.92442 0.91727 0.91076 1.20908 0.96557 1.03024 1.01998 1.20408 0.92489 0.99184 1.00544 1.17040 0.84525 0.97666 0.98798 1.42475 1.05439 1.34021 1.51270 1.60069 1.22454 1.02672 1.38219 1.19756 0.93608 1.00105 0.99894 1.19319 0.95873 1.04667 1.07334 1.18261 0.74608 0.80147 0.80219 1.93058 1.58681 1.73079 1.91794 1.93097 1.62799 1.78498 1.83439 1.93124 1.87688 1.81094 1.55239 0.91414 0.86556 0.84406 0.75533 0.81877 0.85359 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.26 13.66 21.81 0.30 -46.97 15 2 C 0.01 0.51 5.41 85.22 0.46 0.98 15 3 Si 1.10 47.58 24.90 68.60 1.71 49.28 15 4 H -0.25 -9.58 6.44 99.48 0.64 -8.93 15 5 H -0.26 -10.92 7.03 99.48 0.70 -10.22 15 6 H -0.28 -11.93 7.11 99.48 0.71 -11.23 15 7 C -0.54 -30.10 8.12 23.38 0.19 -29.91 15 8 H 0.05 3.14 6.32 -2.91 -0.02 3.12 15 9 C 0.08 3.87 5.11 -21.27 -0.11 3.76 15 10 C -0.21 -9.13 7.20 22.48 0.16 -8.97 15 11 C -0.10 -3.91 9.28 22.15 0.21 -3.70 15 12 C 0.12 4.21 6.71 38.67 0.26 4.47 15 13 N -0.60 -15.54 6.62 -51.06 -0.34 -15.87 15 14 N -0.61 -12.48 9.57 37.02 0.35 -12.12 15 15 C -0.11 -4.20 9.22 22.15 0.20 -3.99 15 16 C -0.27 -12.28 5.39 -19.66 -0.11 -12.39 15 17 C 0.52 23.51 2.84 71.24 0.20 23.71 15 18 F -0.18 -7.18 15.96 44.97 0.72 -6.47 15 19 F -0.20 -9.38 15.67 44.97 0.70 -8.68 15 20 F -0.19 -9.04 16.54 44.97 0.74 -8.30 15 21 H 0.28 15.51 8.73 -92.71 -0.81 14.70 15 22 H 0.12 5.08 4.42 -2.91 -0.01 5.07 15 23 H 0.14 4.37 7.00 -2.91 -0.02 4.35 15 24 H 0.41 8.48 8.83 -215.50 -1.90 6.58 15 25 H 0.37 4.89 9.21 -210.56 -1.94 2.95 15 26 H 0.33 6.37 8.40 -210.56 -1.77 4.60 15 27 H 0.13 4.34 7.12 -2.91 -0.02 4.32 15 Total: -1.00 -61.09 242.79 1.21 -59.88 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.45 Total: 15.31 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: 1.47 Total: -26.06 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: 0.31 Total: -74.96 kcal Atomic # 9 Polarization: -25.61 SS G_CDS: 2.17 Total: -23.44 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.71 Total: 49.28 kcal Total: -61.09 1.21 -59.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396055000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.585 kcal (2) G-P(sol) polarization free energy of solvation -61.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds