Wall clock time and date at job start Mon Mar 30 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48500 * 109.47159 * 270.00028 * 3 2 1 5 5 H 1.48497 * 109.47232 * 30.00213 * 3 2 1 6 6 H 1.48506 * 109.47043 * 150.00411 * 3 2 1 7 7 C 1.39932 * 120.00317 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00158 * 195.42062 * 7 2 1 9 9 C 1.41407 * 119.99825 * 15.41629 * 7 2 1 10 10 C 1.40599 * 120.20888 * 25.27230 * 9 7 2 11 11 C 1.38272 * 119.67972 * 180.02562 * 10 9 7 12 12 N 1.39683 * 119.95815 * 180.02562 * 11 10 9 13 13 N 1.36596 * 120.00459 * 179.97438 * 12 11 10 14 14 C 1.39339 * 120.09440 * 359.97438 * 11 10 9 15 15 C 1.38477 * 120.42597 * 0.27539 * 14 11 10 16 16 C 1.37690 * 120.32316 * 359.44556 * 15 14 11 17 17 C 1.50698 * 120.05630 * 180.27978 * 16 15 14 18 18 F 1.39903 * 109.46769 * 0.27295 * 17 16 15 19 19 F 1.39896 * 109.47372 * 120.27439 * 17 16 15 20 20 F 1.39895 * 109.46881 * 240.27651 * 17 16 15 21 21 H 0.97000 * 120.00323 * 359.97438 * 1 2 3 22 22 H 1.08006 * 120.16255 * 0.04152 * 10 9 7 23 23 H 0.97003 * 119.99405 * 359.97438 * 12 11 10 24 24 H 1.00895 * 110.99798 * 56.04874 * 13 12 11 25 25 H 1.00900 * 110.99916 * 179.97438 * 13 12 11 26 26 H 1.08006 * 119.78761 * 179.97438 * 14 11 10 27 27 H 1.07997 * 119.83542 * 179.70116 * 15 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0588 -1.2287 0.2482 9 6 1.3391 -2.4143 -0.3266 10 6 0.1895 -2.3873 -1.1356 11 6 -0.4562 -3.5696 -1.4472 12 7 -1.5986 -3.5497 -2.2508 13 7 -2.2369 -4.7172 -2.5597 14 6 0.0315 -4.7812 -0.9616 15 6 1.1605 -4.8120 -0.1603 16 6 1.8204 -3.6457 0.1562 17 6 3.0521 -3.6869 1.0235 18 9 3.3302 -5.0120 1.3758 19 9 4.1368 -3.1542 0.3187 20 9 2.8325 -2.9328 2.1812 21 1 -0.4850 0.8400 0.0004 22 1 -0.1873 -1.4477 -1.5120 23 1 -1.9385 -2.7067 -2.5896 24 1 -2.4976 -5.2187 -1.7240 25 1 -3.0415 -4.5457 -3.1440 26 1 -0.4770 -5.7017 -1.2077 27 1 1.5275 -5.7559 0.2149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396056270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:32 Heat of formation + Delta-G solvation = -128.795026 kcal Electronic energy + Delta-G solvation = -18026.369356 eV Core-core repulsion = 14561.581586 eV Total energy + Delta-G solvation = -3464.787769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.76993 -48.32843 -48.18128 -39.89870 -37.40732 -35.43788 -32.27901 -31.53390 -28.63305 -27.21959 -25.41494 -23.15758 -21.88166 -19.49697 -19.22222 -19.08349 -18.46760 -18.35934 -17.40422 -16.70210 -15.71221 -15.28714 -15.16807 -15.00928 -14.79671 -14.69198 -14.56828 -14.44456 -14.29715 -13.79892 -13.64588 -13.27764 -12.82093 -12.62401 -12.25256 -11.96823 -11.68100 -11.46732 -11.05942 -9.96154 -9.38882 -8.70212 -7.85148 -6.47283 0.88973 1.04474 1.39228 1.51027 1.55028 2.18344 2.21068 2.38804 2.72192 3.48427 3.50798 3.62613 4.04093 4.24917 4.58838 4.77118 5.10313 5.16438 5.29556 5.37787 5.79261 5.83985 5.96938 6.05888 6.18974 6.48216 6.81860 6.87546 7.05083 7.56598 8.27067 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.012381 C = 0.007465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.839594 B = 2261.023944 C = 3749.825977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.044 3.956 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.487 4.487 8 H 0.076 0.924 9 C 0.153 3.847 10 C -0.256 4.256 11 C 0.247 3.753 12 N -0.604 5.604 13 N -0.603 5.603 14 C -0.283 4.283 15 C -0.017 4.017 16 C -0.359 4.359 17 C 0.526 3.474 18 F -0.191 7.191 19 F -0.195 7.195 20 F -0.194 7.194 21 H 0.290 0.710 22 H 0.115 0.885 23 H 0.402 0.598 24 H 0.334 0.666 25 H 0.365 0.635 26 H 0.128 0.872 27 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -2.984 -1.983 4.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.189 1.189 7 C -0.516 4.516 8 H 0.094 0.906 9 C 0.149 3.851 10 C -0.282 4.282 11 C 0.144 3.856 12 N -0.328 5.328 13 N -0.230 5.230 14 C -0.306 4.306 15 C -0.036 4.036 16 C -0.363 4.363 17 C 0.472 3.528 18 F -0.172 7.172 19 F -0.177 7.177 20 F -0.175 7.175 21 H 0.101 0.899 22 H 0.133 0.867 23 H 0.240 0.760 24 H 0.149 0.851 25 H 0.180 0.820 26 H 0.145 0.855 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.353 -3.222 -2.341 4.626 hybrid contribution -0.525 1.387 0.648 1.618 sum -2.878 -1.836 -1.692 3.810 Atomic orbital electron populations 1.69852 1.08612 1.30642 1.33897 1.26636 0.95545 1.04114 0.90995 0.85307 0.79131 0.76256 0.79765 1.18225 1.18788 1.18904 1.19945 0.97645 0.92188 1.41788 0.90616 1.17143 0.90489 0.90937 0.86549 1.20542 1.02583 0.95812 1.09252 1.17679 0.85478 0.93976 0.88456 1.43200 1.27115 1.04301 1.58201 1.60062 1.32161 1.09387 1.21353 1.20146 1.02806 0.96186 1.11430 1.20431 0.93431 0.95775 0.93940 1.19757 1.03273 0.97203 1.16096 1.18218 0.84200 0.71853 0.78506 1.93035 1.94761 1.36552 1.92872 1.93078 1.58938 1.86624 1.79032 1.93107 1.94920 1.77132 1.52342 0.89880 0.86694 0.75969 0.85137 0.82034 0.85451 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.84 10.86 21.82 0.24 -39.61 15 2 C 0.04 2.18 5.19 85.25 0.44 2.62 15 3 Si 0.97 37.86 29.59 68.60 2.03 39.89 15 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 5 H -0.26 -9.58 7.11 99.48 0.71 -8.88 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 15 7 C -0.49 -26.00 7.82 23.46 0.18 -25.82 15 8 H 0.08 4.08 6.02 -2.91 -0.02 4.06 15 9 C 0.15 8.10 5.56 -21.31 -0.12 7.98 15 10 C -0.26 -12.74 8.52 22.85 0.19 -12.54 15 11 C 0.25 10.69 6.69 38.16 0.26 10.94 15 12 N -0.60 -20.47 6.65 -51.49 -0.34 -20.81 15 13 N -0.60 -15.81 9.59 37.02 0.35 -15.46 15 14 C -0.28 -11.79 9.37 22.59 0.21 -11.58 15 15 C -0.02 -0.74 9.41 22.20 0.21 -0.53 15 16 C -0.36 -17.67 5.42 -19.38 -0.11 -17.78 15 17 C 0.53 24.47 2.82 71.24 0.20 24.67 15 18 F -0.19 -7.90 15.97 44.97 0.72 -7.18 15 19 F -0.20 -9.15 15.68 44.97 0.71 -8.44 15 20 F -0.19 -9.35 16.48 44.97 0.74 -8.61 15 21 H 0.29 12.88 8.30 -92.71 -0.77 12.11 15 22 H 0.12 5.86 6.13 -2.91 -0.02 5.84 15 23 H 0.40 12.50 8.84 -215.50 -1.90 10.60 15 24 H 0.33 8.22 8.43 -210.57 -1.77 6.44 15 25 H 0.36 6.81 9.21 -210.56 -1.94 4.87 15 26 H 0.13 4.61 7.01 -2.91 -0.02 4.59 15 27 H 0.13 4.79 7.14 -2.91 -0.02 4.77 15 Total: -1.00 -58.06 248.00 1.57 -56.48 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -4.34 Total: 25.77 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 1.47 Total: -22.03 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: 0.25 Total: -75.87 kcal Atomic # 9 Polarization: -26.40 SS G_CDS: 2.16 Total: -24.24 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -58.06 1.57 -56.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.314 kcal (2) G-P(sol) polarization free energy of solvation -58.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds