Wall clock time and date at job start Mon Mar 30 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38288 * 119.97310 * 90.00129 * 10 9 7 12 12 C 1.38242 * 120.10960 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.05702 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.02680 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.47121 * 0.02562 * 14 13 12 16 16 F 1.39907 * 109.47061 * 120.00187 * 14 13 12 17 17 F 1.39892 * 109.47289 * 239.99776 * 14 13 12 18 18 C 1.38711 * 119.94324 * 0.02596 * 13 12 11 19 19 O 1.35898 * 120.05544 * 180.02562 * 18 13 12 20 20 C 1.38125 * 119.96773 * 269.71965 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08002 * 119.94236 * 359.97082 * 11 10 9 25 25 H 1.07995 * 119.97049 * 180.02562 * 12 11 10 26 26 H 0.96702 * 113.99971 * 90.00003 * 19 18 13 27 27 H 1.07996 * 120.03168 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6790 -4.1751 1.1853 12 6 3.5769 -5.2262 1.1839 13 6 4.0278 -5.7498 -0.0126 14 6 5.0062 -6.8960 -0.0132 15 9 5.3063 -7.2536 1.3056 16 9 4.4412 -7.9910 -0.6759 17 9 6.1788 -6.5078 -0.6700 18 6 3.5791 -5.2194 -1.2132 19 8 4.0207 -5.7329 -2.3914 20 6 2.6742 -4.1675 -1.2092 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.3275 -3.7675 2.1216 25 1 3.9256 -5.6391 2.1190 26 1 3.4763 -6.4548 -2.7345 27 1 2.3202 -3.7556 -2.1427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396056355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:14 Heat of formation + Delta-G solvation = -183.782334 kcal Electronic energy + Delta-G solvation = -17460.942812 eV Core-core repulsion = 13961.477863 eV Total energy + Delta-G solvation = -3499.464949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.97504 -47.53103 -47.40445 -39.58532 -36.73116 -33.67296 -31.87628 -29.66493 -28.25999 -25.17870 -22.96112 -22.49893 -20.75714 -18.48895 -18.29579 -18.20117 -17.34092 -16.45943 -15.39936 -15.14706 -14.63268 -14.37616 -14.22480 -14.16018 -13.90708 -13.72411 -13.61327 -13.42361 -12.64975 -12.32362 -12.03482 -11.74581 -11.40564 -11.11505 -10.94610 -10.61347 -10.48992 -9.76923 -9.64009 -8.54808 -8.52334 -8.29699 -6.17300 -4.22383 1.30780 1.57341 2.87607 3.26236 3.30548 3.33768 3.81450 3.95707 4.21690 4.28639 4.36814 4.64593 5.14106 5.20333 5.54095 5.65701 5.82210 5.98971 6.15361 6.47511 6.67666 6.82861 7.08792 7.34766 7.54311 7.71633 7.77609 8.12549 8.82103 9.42660 10.92640 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039619 B = 0.005461 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.561765 B = 5125.801163 C = 5173.445615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.043 3.957 10 C 0.015 3.985 11 C -0.134 4.134 12 C -0.062 4.062 13 C -0.245 4.245 14 C 0.518 3.482 15 F -0.183 7.183 16 F -0.185 7.185 17 F -0.175 7.175 18 C 0.152 3.848 19 O -0.495 6.495 20 C -0.151 4.151 21 H 0.265 0.735 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.134 0.866 25 H 0.133 0.867 26 H 0.391 0.609 27 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.782 -12.574 -0.058 13.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.015 3.985 11 C -0.152 4.152 12 C -0.080 4.080 13 C -0.247 4.247 14 C 0.464 3.536 15 F -0.165 7.165 16 F -0.166 7.166 17 F -0.157 7.157 18 C 0.108 3.892 19 O -0.305 6.305 20 C -0.169 4.169 21 H 0.074 0.926 22 H 0.054 0.946 23 H 0.053 0.947 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.247 0.753 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.093 -12.069 -0.008 13.520 hybrid contribution 0.317 0.388 -0.100 0.511 sum 6.410 -11.681 -0.107 13.325 Atomic orbital electron populations 1.69936 1.06067 1.27247 1.49737 1.24995 0.94917 0.99371 0.94792 0.86542 0.79522 0.82455 0.78894 1.20038 1.21130 1.20028 1.20947 0.93088 0.89507 1.52154 0.92310 1.18491 0.92481 0.89265 0.99117 1.20906 0.93431 0.92935 0.91264 1.21167 0.98424 0.96386 0.99206 1.20836 0.95502 0.95655 0.96002 1.20113 1.06608 1.01828 0.96150 1.18162 0.80333 0.82151 0.72974 1.93127 1.93910 1.92830 1.36602 1.93154 1.84998 1.57274 1.81221 1.93207 1.50351 1.90898 1.81216 1.18079 0.93595 0.94092 0.83483 1.84827 1.55009 1.54941 1.35771 1.21394 0.98229 0.97397 0.99897 0.92565 0.94565 0.94702 0.84803 0.84961 0.75305 0.84531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.22 13.29 55.43 0.74 -24.49 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 15 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.52 -13.82 9.09 -34.44 -0.31 -14.13 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.04 1.03 5.10 -29.03 -0.15 0.88 15 10 C 0.01 0.30 5.07 -104.64 -0.53 -0.23 15 11 C -0.13 -2.35 9.70 -39.56 -0.38 -2.73 15 12 C -0.06 -0.96 9.43 -39.61 -0.37 -1.34 15 13 C -0.25 -3.93 5.38 -104.47 -0.56 -4.50 15 14 C 0.52 7.70 2.99 36.01 0.11 7.80 15 15 F -0.18 -2.59 15.97 2.25 0.04 -2.56 15 16 F -0.19 -2.58 16.95 2.25 0.04 -2.54 15 17 F -0.18 -2.80 16.95 2.25 0.04 -2.76 15 18 C 0.15 2.53 6.58 -39.22 -0.26 2.27 15 19 O -0.50 -7.23 12.41 -19.42 -0.24 -7.47 15 20 C -0.15 -2.76 9.64 -39.43 -0.38 -3.14 15 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.04 0.89 8.09 -51.93 -0.42 0.47 15 23 H 0.03 0.87 8.08 -51.93 -0.42 0.45 15 24 H 0.13 2.20 8.06 -52.49 -0.42 1.77 15 25 H 0.13 1.74 7.16 -52.49 -0.38 1.36 15 26 H 0.39 3.81 9.06 45.56 0.41 4.22 15 27 H 0.14 2.43 8.06 -52.49 -0.42 2.01 15 LS Contribution 259.43 15.07 3.91 3.91 Total: -1.00 -28.74 259.43 -4.63 -33.37 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -1.19 Total: 0.21 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.94 Total: -13.54 kcal Atomic # 7 Polarization: -25.22 SS G_CDS: 0.74 Total: -24.49 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.24 Total: -7.47 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.11 Total: -7.85 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.74 -4.63 -33.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.415 kcal (2) G-P(sol) polarization free energy of solvation -28.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds