Wall clock time and date at job start Mon Mar 30 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38288 * 119.97310 * 90.00129 * 10 9 7 12 12 C 1.38242 * 120.10960 * 179.97438 * 11 10 9 13 13 C 1.38169 * 120.05702 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.02680 * 180.02562 * 13 12 11 15 15 F 1.39899 * 109.47121 * 0.02562 * 14 13 12 16 16 F 1.39907 * 109.47061 * 120.00187 * 14 13 12 17 17 F 1.39892 * 109.47289 * 239.99776 * 14 13 12 18 18 C 1.38711 * 119.94324 * 0.02596 * 13 12 11 19 19 O 1.35898 * 120.05544 * 180.02562 * 18 13 12 20 20 C 1.38125 * 119.96773 * 269.71965 * 10 9 7 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08002 * 119.94236 * 359.97082 * 11 10 9 25 25 H 1.07995 * 119.97049 * 180.02562 * 12 11 10 26 26 H 0.96702 * 113.99971 * 90.00003 * 19 18 13 27 27 H 1.07996 * 120.03168 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6790 -4.1751 1.1853 12 6 3.5769 -5.2262 1.1839 13 6 4.0278 -5.7498 -0.0126 14 6 5.0062 -6.8960 -0.0132 15 9 5.3063 -7.2536 1.3056 16 9 4.4412 -7.9910 -0.6759 17 9 6.1788 -6.5078 -0.6700 18 6 3.5791 -5.2194 -1.2132 19 8 4.0207 -5.7329 -2.3914 20 6 2.6742 -4.1675 -1.2092 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.3275 -3.7675 2.1216 25 1 3.9256 -5.6391 2.1190 26 1 3.4763 -6.4548 -2.7345 27 1 2.3202 -3.7556 -2.1427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396056355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:14 Heat of formation + Delta-G solvation = -201.116126 kcal Electronic energy + Delta-G solvation = -17461.694461 eV Core-core repulsion = 13961.477863 eV Total energy + Delta-G solvation = -3500.216599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.14083 -48.66998 -48.59080 -40.91769 -38.02797 -35.48999 -33.55778 -31.00410 -29.95522 -26.75816 -24.62480 -23.82609 -22.19931 -19.71085 -19.47246 -19.38872 -18.63440 -18.51687 -16.75758 -16.74601 -16.15237 -15.62335 -15.50745 -15.39597 -15.05202 -14.96989 -14.77374 -14.68040 -14.50030 -13.94442 -13.57676 -13.21148 -13.00955 -12.73117 -12.58943 -12.33941 -12.09731 -11.62600 -11.35818 -10.61460 -9.94848 -9.71487 -8.23527 -6.35805 -0.05282 0.23838 1.41824 1.43036 1.51350 1.66913 2.35007 2.52481 2.72276 3.00391 3.08303 3.11287 3.44843 3.89120 4.11350 4.31490 4.43314 4.65969 4.79882 5.10425 5.21381 5.26156 5.31014 5.70772 5.72433 5.84591 6.11571 6.64937 6.76071 7.33182 8.86176 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.039619 B = 0.005461 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.561765 B = 5125.801163 C = 5173.445615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.051 3.949 10 C -0.008 4.008 11 C -0.138 4.138 12 C -0.049 4.049 13 C -0.245 4.245 14 C 0.525 3.475 15 F -0.176 7.176 16 F -0.177 7.177 17 F -0.181 7.181 18 C 0.162 3.838 19 O -0.498 6.498 20 C -0.161 4.161 21 H 0.267 0.733 22 H 0.018 0.982 23 H 0.013 0.987 24 H 0.141 0.859 25 H 0.163 0.837 26 H 0.413 0.587 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.312 -13.381 0.243 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.786 3.214 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.571 4.571 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.009 4.009 11 C -0.156 4.156 12 C -0.066 4.066 13 C -0.247 4.247 14 C 0.471 3.529 15 F -0.157 7.157 16 F -0.159 7.159 17 F -0.162 7.162 18 C 0.117 3.883 19 O -0.312 6.312 20 C -0.180 4.180 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.031 0.969 24 H 0.158 0.842 25 H 0.181 0.819 26 H 0.274 0.726 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.624 -12.905 0.284 14.991 hybrid contribution -0.140 0.523 -0.231 0.589 sum 7.483 -12.382 0.053 14.468 Atomic orbital electron populations 1.70047 1.07509 1.28138 1.50808 1.25831 0.95711 1.02855 0.94437 0.85549 0.78348 0.78361 0.79127 1.19583 1.20616 1.19194 1.21290 0.93129 0.91042 1.51665 0.92676 1.18224 0.92856 0.90405 0.97109 1.20577 0.94191 0.93009 0.93087 1.21221 0.98887 0.97001 0.98525 1.21079 0.94051 0.94321 0.97199 1.20326 1.06360 1.01999 0.96038 1.17906 0.79780 0.81890 0.73299 1.93147 1.93813 1.92711 1.36053 1.93174 1.84851 1.56746 1.81100 1.93204 1.50604 1.91006 1.81384 1.17973 0.92535 0.93367 0.84447 1.84773 1.55468 1.55947 1.35033 1.21342 0.99164 0.98309 0.99173 0.92440 0.96323 0.96919 0.84162 0.81927 0.72649 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.45 0.28 -53.12 15 2 C 0.01 0.59 5.46 84.66 0.46 1.05 15 3 Si 0.96 42.84 29.54 68.60 2.03 44.87 15 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.53 -28.92 9.09 25.60 0.23 -28.68 15 8 H 0.05 2.96 7.74 -2.91 -0.02 2.93 15 9 C 0.05 2.52 5.10 29.10 0.15 2.67 15 10 C -0.01 -0.34 5.07 -19.88 -0.10 -0.44 15 11 C -0.14 -4.72 9.70 22.28 0.22 -4.50 15 12 C -0.05 -1.39 9.43 22.25 0.21 -1.18 15 13 C -0.25 -7.23 5.38 -19.77 -0.11 -7.34 15 14 C 0.53 13.99 2.99 71.24 0.21 14.20 15 15 F -0.18 -4.37 15.97 44.97 0.72 -3.65 15 16 F -0.18 -4.38 16.95 44.97 0.76 -3.62 15 17 F -0.18 -5.25 16.95 44.97 0.76 -4.48 15 18 C 0.16 5.08 6.58 22.51 0.15 5.23 15 19 O -0.50 -13.41 12.41 -92.40 -1.15 -14.56 15 20 C -0.16 -5.87 9.64 22.37 0.22 -5.65 15 21 H 0.27 14.52 8.31 -92.70 -0.77 13.75 15 22 H 0.02 0.96 8.09 -2.38 -0.02 0.94 15 23 H 0.01 0.66 8.08 -2.39 -0.02 0.64 15 24 H 0.14 4.51 8.06 -2.91 -0.02 4.48 15 25 H 0.16 3.65 7.16 -2.91 -0.02 3.63 15 26 H 0.41 6.98 9.06 -74.06 -0.67 6.31 15 27 H 0.13 4.79 8.06 -2.91 -0.02 4.77 15 Total: -1.00 -60.70 259.43 5.60 -55.11 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: 0.55 Total: 4.11 kcal Atomic # 6 Polarization: -26.29 SS G_CDS: 1.64 Total: -24.65 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.28 Total: -53.12 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -1.15 Total: -14.56 kcal Atomic # 9 Polarization: -14.00 SS G_CDS: 2.24 Total: -11.76 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -60.70 5.60 -55.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.010 kcal (2) G-P(sol) polarization free energy of solvation -60.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds