Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48500 * 109.47015 * 275.55350 * 3 2 1 5 5 H 1.48495 * 109.47358 * 35.55465 * 3 2 1 6 6 H 1.48502 * 109.47255 * 155.55859 * 3 2 1 7 7 C 1.39922 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99866 * 341.88629 * 7 2 1 9 9 C 1.41050 * 120.00023 * 161.88305 * 7 2 1 10 10 C 1.41570 * 120.30392 * 311.95832 * 9 7 2 11 11 N 1.38735 * 120.29629 * 359.97438 * 10 9 7 12 12 N 1.36598 * 120.00013 * 173.92921 * 11 10 9 13 13 C 1.38718 * 119.40817 * 179.72762 * 10 9 7 14 14 C 1.38205 * 120.02289 * 0.49725 * 13 10 9 15 15 C 1.38857 * 120.62985 * 359.49464 * 14 13 10 16 16 C 1.36487 * 120.59355 * 0.25355 * 15 14 13 17 17 C 1.50704 * 120.02131 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47089 * 359.97438 * 17 16 15 19 19 F 1.39893 * 109.47092 * 120.00175 * 17 16 15 20 20 F 1.39905 * 109.46827 * 239.99990 * 17 16 15 21 21 H 0.96998 * 120.00543 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00192 * 353.92920 * 11 10 9 23 23 H 1.00897 * 111.00237 * 182.81947 * 12 11 10 24 24 H 1.00908 * 111.00055 * 306.76839 * 12 11 10 25 25 H 1.07998 * 119.98460 * 180.27390 * 13 10 9 26 26 H 1.07999 * 119.68230 * 179.76551 * 14 13 10 27 27 H 1.07995 * 119.70608 * 180.27390 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3728 2.1142 -1.3935 5 1 1.5038 2.6160 0.8141 6 1 3.5941 1.4093 0.5793 7 6 2.0085 -1.2117 0.0005 8 1 1.5086 -2.1238 0.2918 9 6 3.3666 -1.2421 -0.3793 10 6 3.7920 -0.5922 -1.5629 11 7 2.8768 0.0799 -2.3599 12 7 3.3095 0.8082 -3.4315 13 6 5.1330 -0.6291 -1.9158 14 6 6.0391 -1.3047 -1.1204 15 6 5.6233 -1.9426 0.0408 16 6 4.3109 -1.9181 0.4149 17 6 3.8736 -2.6153 1.6774 18 9 4.9819 -3.2113 2.2888 19 9 3.3035 -1.6833 2.5512 20 9 2.9294 -3.5989 1.3639 21 1 -0.4851 0.8400 -0.0004 22 1 1.9296 0.0327 -2.1563 23 1 2.5393 1.2751 -3.8862 24 1 4.0210 1.4687 -3.1563 25 1 5.4685 -0.1328 -2.8144 26 1 7.0813 -1.3331 -1.4024 27 1 6.3447 -2.4624 0.6536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396059686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = -97.579872 kcal Electronic energy + Delta-G solvation = -18548.572996 eV Core-core repulsion = 15085.138818 eV Total energy + Delta-G solvation = -3463.434179 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.08155 -46.66858 -46.44460 -38.75882 -35.76672 -33.72225 -30.92620 -30.49718 -26.75899 -25.70410 -24.13397 -20.99442 -20.39986 -18.38446 -17.40824 -17.37428 -17.15915 -16.52717 -15.65388 -15.24241 -14.23788 -13.94823 -13.62900 -13.50884 -13.32432 -13.01323 -12.78976 -12.71887 -12.68672 -12.67334 -11.98972 -11.65682 -11.29674 -11.00140 -10.67432 -10.35367 -10.24681 -9.83393 -9.26018 -8.50980 -7.88258 -7.00438 -6.36599 -4.54556 2.18241 2.51850 2.90984 3.06049 3.18176 3.75625 3.83591 3.96896 4.38682 4.89602 5.01339 5.25937 5.61480 5.67018 5.92226 6.21862 6.25900 6.53583 6.81590 6.90110 7.08991 7.25455 7.41987 7.52552 7.75877 8.16776 8.32710 8.57258 8.64378 9.02639 10.04762 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.013409 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.829354 B = 2087.669198 C = 2843.011726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.080 3.920 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.250 1.250 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.086 3.914 10 C 0.144 3.856 11 N -0.596 5.596 12 N -0.599 5.599 13 C -0.148 4.148 14 C -0.173 4.173 15 C -0.099 4.099 16 C -0.238 4.238 17 C 0.523 3.477 18 F -0.199 7.199 19 F -0.179 7.179 20 F -0.186 7.186 21 H 0.283 0.717 22 H 0.411 0.589 23 H 0.344 0.656 24 H 0.319 0.681 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.715 1.891 -1.627 6.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.136 4.136 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.173 1.173 7 C -0.508 4.508 8 H 0.121 0.879 9 C 0.080 3.920 10 C 0.043 3.957 11 N -0.327 5.327 12 N -0.222 5.222 13 C -0.173 4.173 14 C -0.193 4.193 15 C -0.120 4.120 16 C -0.242 4.242 17 C 0.469 3.531 18 F -0.181 7.181 19 F -0.161 7.161 20 F -0.167 7.167 21 H 0.093 0.907 22 H 0.253 0.747 23 H 0.156 0.844 24 H 0.134 0.866 25 H 0.129 0.871 26 H 0.124 0.876 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.707 1.369 -2.008 6.202 hybrid contribution -0.606 1.585 0.740 1.851 sum 5.101 2.954 -1.268 6.029 Atomic orbital electron populations 1.69735 1.07650 1.29771 1.36716 1.25948 0.94650 1.00841 0.92160 0.86493 0.81722 0.80508 0.78185 1.20056 1.21663 1.17305 1.19229 0.92638 0.96840 1.42053 0.87937 1.16919 0.93358 0.92584 0.89137 1.17725 0.88937 0.99034 0.90053 1.43253 1.07837 1.52319 1.29274 1.60282 1.14944 1.29585 1.17435 1.20340 0.91753 1.04369 1.00819 1.20285 0.98076 1.03904 0.97010 1.20094 0.93975 1.00450 0.97453 1.19407 0.94838 1.13745 0.96228 1.18182 0.73736 0.76503 0.84701 1.93044 1.54452 1.85177 1.85417 1.93146 1.85439 1.65747 1.71748 1.93129 1.66403 1.64168 1.92998 0.90681 0.74672 0.84383 0.86643 0.87074 0.87645 0.87393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.78 13.93 55.55 0.77 -20.01 15 2 C 0.08 2.01 4.07 -17.32 -0.07 1.94 15 3 Si 0.90 20.00 24.53 -169.99 -4.17 15.83 15 4 H -0.27 -5.49 6.10 56.52 0.34 -5.14 15 5 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 6 H -0.25 -5.90 7.11 56.52 0.40 -5.50 15 7 C -0.48 -12.41 7.50 -37.89 -0.28 -12.69 15 8 H 0.10 2.90 6.88 -52.48 -0.36 2.54 15 9 C 0.09 2.10 4.53 -106.63 -0.48 1.62 15 10 C 0.14 3.22 5.24 -83.29 -0.44 2.78 15 11 N -0.60 -12.23 3.99 32.72 0.13 -12.10 15 12 N -0.60 -9.88 9.27 60.35 0.56 -9.32 15 13 C -0.15 -3.00 9.33 -39.42 -0.37 -3.37 15 14 C -0.17 -3.35 10.03 -39.36 -0.40 -3.75 15 15 C -0.10 -2.05 9.37 -39.98 -0.37 -2.42 15 16 C -0.24 -5.50 5.39 -104.33 -0.56 -6.06 15 17 C 0.52 11.72 2.89 36.01 0.10 11.82 15 18 F -0.20 -4.01 15.94 2.25 0.04 -3.98 15 19 F -0.18 -4.20 16.55 2.25 0.04 -4.17 15 20 F -0.19 -4.27 15.84 2.25 0.04 -4.23 15 21 H 0.28 6.60 8.30 -40.82 -0.34 6.26 15 22 H 0.41 8.90 5.75 -185.16 -1.06 7.83 15 23 H 0.34 4.76 9.21 -181.37 -1.67 3.09 15 24 H 0.32 4.89 8.51 -181.36 -1.54 3.35 15 25 H 0.11 2.01 7.13 -52.49 -0.37 1.64 15 26 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.11 1.98 7.10 -52.49 -0.37 1.61 15 LS Contribution 239.63 15.07 3.61 3.61 Total: -1.00 -26.66 239.63 -6.85 -33.52 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.00 Total: 10.97 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -2.87 Total: -10.13 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 1.46 Total: -41.42 kcal Atomic # 9 Polarization: -12.49 SS G_CDS: 0.11 Total: -12.38 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.17 Total: 15.83 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.66 -6.85 -33.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.061 kcal (2) G-P(sol) polarization free energy of solvation -26.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds