Wall clock time and date at job start Mon Mar 30 2020 06:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86799 * 119.99566 * 2 1 4 4 H 1.48500 * 109.47015 * 275.55350 * 3 2 1 5 5 H 1.48495 * 109.47358 * 35.55465 * 3 2 1 6 6 H 1.48502 * 109.47255 * 155.55859 * 3 2 1 7 7 C 1.39922 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99866 * 341.88629 * 7 2 1 9 9 C 1.41050 * 120.00023 * 161.88305 * 7 2 1 10 10 C 1.41570 * 120.30392 * 311.95832 * 9 7 2 11 11 N 1.38735 * 120.29629 * 359.97438 * 10 9 7 12 12 N 1.36598 * 120.00013 * 173.92921 * 11 10 9 13 13 C 1.38718 * 119.40817 * 179.72762 * 10 9 7 14 14 C 1.38205 * 120.02289 * 0.49725 * 13 10 9 15 15 C 1.38857 * 120.62985 * 359.49464 * 14 13 10 16 16 C 1.36487 * 120.59355 * 0.25355 * 15 14 13 17 17 C 1.50704 * 120.02131 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47089 * 359.97438 * 17 16 15 19 19 F 1.39893 * 109.47092 * 120.00175 * 17 16 15 20 20 F 1.39905 * 109.46827 * 239.99990 * 17 16 15 21 21 H 0.96998 * 120.00543 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00192 * 353.92920 * 11 10 9 23 23 H 1.00897 * 111.00237 * 182.81947 * 12 11 10 24 24 H 1.00908 * 111.00055 * 306.76839 * 12 11 10 25 25 H 1.07998 * 119.98460 * 180.27390 * 13 10 9 26 26 H 1.07999 * 119.68230 * 179.76551 * 14 13 10 27 27 H 1.07995 * 119.70608 * 180.27390 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.3728 2.1142 -1.3935 5 1 1.5038 2.6160 0.8141 6 1 3.5941 1.4093 0.5793 7 6 2.0085 -1.2117 0.0005 8 1 1.5086 -2.1238 0.2918 9 6 3.3666 -1.2421 -0.3793 10 6 3.7920 -0.5922 -1.5629 11 7 2.8768 0.0799 -2.3599 12 7 3.3095 0.8082 -3.4315 13 6 5.1330 -0.6291 -1.9158 14 6 6.0391 -1.3047 -1.1204 15 6 5.6233 -1.9426 0.0408 16 6 4.3109 -1.9181 0.4149 17 6 3.8736 -2.6153 1.6774 18 9 4.9819 -3.2113 2.2888 19 9 3.3035 -1.6833 2.5512 20 9 2.9294 -3.5989 1.3639 21 1 -0.4851 0.8400 -0.0004 22 1 1.9296 0.0327 -2.1563 23 1 2.5393 1.2751 -3.8862 24 1 4.0210 1.4687 -3.1563 25 1 5.4685 -0.1328 -2.8144 26 1 7.0813 -1.3331 -1.4024 27 1 6.3447 -2.4624 0.6536 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396059686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:34 Heat of formation + Delta-G solvation = -114.786323 kcal Electronic energy + Delta-G solvation = -18549.319124 eV Core-core repulsion = 15085.138818 eV Total energy + Delta-G solvation = -3464.180306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.86806 -48.41892 -48.28963 -40.40181 -37.30333 -35.51301 -32.64922 -32.09756 -28.37872 -27.36783 -25.89892 -22.67976 -22.08582 -20.10944 -19.18595 -19.16832 -18.83133 -18.10155 -17.29878 -16.90970 -15.87669 -15.51737 -15.36741 -15.26713 -15.09856 -14.78542 -14.54713 -14.52732 -14.46133 -14.33489 -13.61551 -13.38163 -12.94263 -12.80466 -12.33167 -12.03060 -11.92855 -11.55785 -11.05039 -10.03145 -9.57208 -8.83394 -7.97710 -6.41362 0.47849 0.85696 1.15378 1.31578 1.39842 2.03028 2.05036 2.38554 2.64215 3.14265 3.25168 3.51458 3.83456 4.28321 4.39862 4.66525 4.69338 4.90735 5.17847 5.30254 5.48464 5.73193 5.82230 5.88163 6.13097 6.31172 6.53047 6.75030 6.97748 7.52173 8.27203 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022202 B = 0.013409 C = 0.009846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.829354 B = 2087.669198 C = 2843.011726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.052 3.948 3 Si 0.955 3.045 4 H -0.241 1.241 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.053 3.947 10 C 0.137 3.863 11 N -0.602 5.602 12 N -0.596 5.596 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.246 4.246 17 C 0.520 3.480 18 F -0.184 7.184 19 F -0.189 7.189 20 F -0.194 7.194 21 H 0.289 0.711 22 H 0.403 0.597 23 H 0.361 0.639 24 H 0.333 0.667 25 H 0.140 0.860 26 H 0.149 0.851 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.377 2.964 -3.047 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.160 4.160 3 Si 0.779 3.221 4 H -0.165 1.165 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.047 3.953 10 C 0.034 3.966 11 N -0.330 5.330 12 N -0.222 5.222 13 C -0.173 4.173 14 C -0.168 4.168 15 C -0.133 4.133 16 C -0.250 4.250 17 C 0.466 3.534 18 F -0.165 7.165 19 F -0.171 7.171 20 F -0.175 7.175 21 H 0.099 0.901 22 H 0.244 0.756 23 H 0.175 0.825 24 H 0.148 0.852 25 H 0.157 0.843 26 H 0.167 0.833 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.373 2.446 -3.460 9.384 hybrid contribution -1.228 1.143 1.134 2.025 sum 7.145 3.589 -2.326 8.327 Atomic orbital electron populations 1.69774 1.08735 1.30692 1.39243 1.26443 0.95045 1.02859 0.91636 0.85736 0.79140 0.77542 0.79656 1.16535 1.21894 1.19525 1.19016 0.93896 0.95832 1.44446 0.92266 1.17048 0.92893 0.94754 0.90585 1.17908 0.90205 0.98811 0.89644 1.43310 1.07283 1.52673 1.29719 1.60161 1.15960 1.30220 1.15859 1.20753 0.90795 1.04042 1.01748 1.20852 1.00017 1.00732 0.95223 1.20443 0.93214 1.01107 0.98583 1.19727 0.96071 1.13044 0.96140 1.18270 0.73886 0.76349 0.84867 1.93064 1.53424 1.84879 1.85173 1.93121 1.85722 1.66176 1.72068 1.93109 1.66907 1.64432 1.93083 0.90099 0.75633 0.82505 0.85239 0.84252 0.83325 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.38 13.93 21.83 0.30 -45.07 15 2 C 0.05 2.67 4.07 85.24 0.35 3.02 15 3 Si 0.96 41.07 24.53 68.60 1.68 42.75 15 4 H -0.24 -8.86 6.10 99.48 0.61 -8.25 15 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.27 -12.48 7.11 99.48 0.71 -11.77 15 7 C -0.50 -26.99 7.50 23.37 0.18 -26.81 15 8 H 0.06 3.60 6.88 -2.91 -0.02 3.58 15 9 C 0.05 2.60 4.53 -21.17 -0.10 2.50 15 10 C 0.14 5.84 5.24 38.99 0.20 6.04 15 11 N -0.60 -23.46 3.99 -50.39 -0.20 -23.67 15 12 N -0.60 -17.57 9.27 37.02 0.34 -17.23 15 13 C -0.15 -5.41 9.33 22.38 0.21 -5.20 15 14 C -0.15 -5.05 10.03 22.41 0.22 -4.82 15 15 C -0.11 -4.30 9.37 22.01 0.21 -4.10 15 16 C -0.25 -11.17 5.39 -19.67 -0.11 -11.27 15 17 C 0.52 23.43 2.89 71.24 0.21 23.64 15 18 F -0.18 -7.19 15.94 44.97 0.72 -6.47 15 19 F -0.19 -9.08 16.55 44.97 0.74 -8.33 15 20 F -0.19 -9.20 15.84 44.97 0.71 -8.49 15 21 H 0.29 13.87 8.30 -92.71 -0.77 13.10 15 22 H 0.40 17.14 5.75 -215.50 -1.24 15.90 15 23 H 0.36 8.77 9.21 -210.56 -1.94 6.83 15 24 H 0.33 8.72 8.51 -210.55 -1.79 6.93 15 25 H 0.14 4.26 7.13 -2.91 -0.02 4.24 15 26 H 0.15 3.80 8.06 -2.91 -0.02 3.78 15 27 H 0.13 4.33 7.10 -2.91 -0.02 4.31 15 Total: -1.00 -58.49 239.63 1.87 -56.62 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -3.80 Total: 26.89 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 1.37 Total: -17.00 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: 0.45 Total: -85.97 kcal Atomic # 9 Polarization: -25.47 SS G_CDS: 2.17 Total: -23.29 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.68 Total: 42.75 kcal Total: -58.49 1.87 -56.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.163 kcal (2) G-P(sol) polarization free energy of solvation -58.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds