Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48502 * 109.46889 * 90.00214 * 3 2 1 5 5 H 1.48499 * 109.46810 * 209.99803 * 3 2 1 6 6 H 1.48496 * 109.47305 * 329.99996 * 3 2 1 7 7 C 1.39926 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99423 * 17.41105 * 7 2 1 9 9 C 1.41041 * 120.00398 * 197.41424 * 7 2 1 10 10 C 1.40728 * 120.30444 * 29.07128 * 9 7 2 11 11 C 1.36453 * 119.94745 * 179.74500 * 10 9 7 12 12 C 1.38903 * 120.59725 * 0.56232 * 11 10 9 13 13 C 1.50699 * 119.68381 * 179.71899 * 12 11 10 14 14 F 1.39908 * 109.46792 * 269.97589 * 13 12 11 15 15 F 1.39896 * 109.47615 * 29.97498 * 13 12 11 16 16 F 1.39903 * 109.47140 * 149.97807 * 13 12 11 17 17 C 1.38154 * 120.62679 * 359.69167 * 12 11 10 18 18 C 1.38758 * 120.02865 * 0.02562 * 17 12 11 19 19 N 1.38729 * 120.29709 * 179.97438 * 18 17 12 20 20 N 1.36600 * 119.99888 * 0.02562 * 19 18 17 21 21 H 0.96996 * 119.99945 * 175.40418 * 1 2 3 22 22 H 1.07994 * 120.02647 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.69934 * 180.27917 * 11 10 9 24 24 H 1.08007 * 119.98825 * 180.02562 * 17 12 11 25 25 H 0.97000 * 120.00402 * 180.02562 * 19 18 17 26 26 H 1.00900 * 111.00133 * 179.97438 * 20 19 18 27 27 H 1.00898 * 111.00501 * 303.95652 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 1.4001 5 1 3.5404 1.4401 -0.7000 6 1 1.4403 2.6527 -0.7000 7 6 2.0085 -1.2118 -0.0005 8 1 1.5056 -2.1255 -0.2808 9 6 3.3705 -1.2400 0.3650 10 6 3.8821 -0.2931 1.2717 11 6 5.1998 -0.3303 1.6242 12 6 6.0486 -1.2896 1.0870 13 6 7.5017 -1.3079 1.4859 14 9 8.2361 -0.5021 0.6092 15 9 7.6336 -0.8188 2.7900 16 9 7.9845 -2.6197 1.4289 17 6 5.5732 -2.2275 0.1908 18 6 4.2365 -2.2172 -0.1813 19 7 3.7533 -3.1560 -1.0812 20 7 4.5944 -4.0964 -1.6046 21 1 -0.4850 -0.8373 -0.0673 22 1 3.2314 0.4596 1.6916 23 1 5.5872 0.3955 2.3239 24 1 6.2422 -2.9690 -0.2202 25 1 2.8182 -3.1446 -1.3387 26 1 4.1033 -4.7073 -2.2400 27 1 5.3847 -3.6627 -2.0578 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396059770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = -114.441450 kcal Electronic energy + Delta-G solvation = -17856.419362 eV Core-core repulsion = 14392.254010 eV Total energy + Delta-G solvation = -3464.165352 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.41524 -46.95127 -46.88916 -38.60261 -35.74971 -34.05232 -31.21287 -29.96250 -26.76821 -26.39283 -23.23616 -21.49947 -20.45938 -18.43160 -18.02316 -17.75953 -17.60726 -16.65468 -15.50335 -14.75761 -14.55999 -13.96264 -13.85354 -13.72933 -13.56712 -13.39247 -13.15587 -13.10525 -12.72277 -12.69194 -12.07468 -11.72110 -11.00000 -10.97008 -10.75824 -10.29487 -9.99849 -9.60346 -9.22516 -8.54260 -8.00461 -7.49290 -6.50761 -4.62637 2.20444 2.65724 3.11389 3.25531 3.46589 3.52097 3.86390 3.91019 4.28532 4.77443 4.90809 5.03825 5.36988 5.65262 5.93451 6.08160 6.50710 6.56852 6.92222 6.98471 7.16114 7.23574 7.37111 7.51170 7.66819 8.00525 8.18934 8.42695 8.62373 9.02600 9.82018 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.009223 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.631512 B = 3035.039548 C = 3876.699311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.044 3.956 3 Si 1.073 2.927 4 H -0.273 1.273 5 H -0.261 1.261 6 H -0.289 1.289 7 C -0.506 4.506 8 H 0.077 0.923 9 C 0.081 3.919 10 C -0.231 4.231 11 C -0.061 4.061 12 C -0.277 4.277 13 C 0.516 3.484 14 F -0.194 7.194 15 F -0.191 7.191 16 F -0.191 7.191 17 C -0.112 4.112 18 C 0.126 3.874 19 N -0.600 5.600 20 N -0.602 5.602 21 H 0.287 0.713 22 H 0.115 0.885 23 H 0.104 0.896 24 H 0.111 0.889 25 H 0.401 0.599 26 H 0.343 0.657 27 H 0.319 0.681 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.162 -1.694 -1.660 7.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.177 4.177 3 Si 0.899 3.101 4 H -0.200 1.200 5 H -0.185 1.185 6 H -0.217 1.217 7 C -0.535 4.535 8 H 0.095 0.905 9 C 0.074 3.926 10 C -0.251 4.251 11 C -0.081 4.081 12 C -0.280 4.280 13 C 0.462 3.538 14 F -0.176 7.176 15 F -0.173 7.173 16 F -0.172 7.172 17 C -0.137 4.137 18 C 0.026 3.974 19 N -0.329 5.329 20 N -0.225 5.225 21 H 0.099 0.901 22 H 0.133 0.867 23 H 0.122 0.878 24 H 0.129 0.871 25 H 0.240 0.760 26 H 0.155 0.845 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 7.083 -0.457 -0.916 7.157 hybrid contribution -0.241 -1.528 -1.082 1.888 sum 6.842 -1.985 -1.998 7.399 Atomic orbital electron populations 1.70574 1.08020 1.33161 1.31148 1.27335 0.95575 1.04550 0.90231 0.83569 0.75561 0.72783 0.78210 1.19977 1.18514 1.21687 1.20437 0.94813 0.96678 1.41564 0.90485 1.17495 0.92876 0.90993 0.91216 1.20509 0.95315 1.04957 1.04313 1.19932 0.93581 0.96378 0.98180 1.18816 0.89781 1.06969 1.12451 1.18508 0.89013 0.72500 0.73782 1.93144 1.80435 1.74210 1.69774 1.93096 1.96821 1.88162 1.39220 1.93103 1.90216 1.37765 1.96149 1.19647 0.94385 0.99376 1.00301 1.17462 0.91871 0.93468 0.94610 1.42701 1.08320 1.33473 1.48396 1.60207 1.07211 1.13804 1.41282 0.90148 0.86741 0.87821 0.87075 0.76004 0.84527 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.26 13.66 55.55 0.76 -19.50 15 2 C 0.04 1.06 5.42 -17.32 -0.09 0.97 15 3 Si 1.07 22.98 24.90 -169.99 -4.23 18.74 15 4 H -0.27 -5.57 6.44 56.52 0.36 -5.21 15 5 H -0.26 -5.59 7.02 56.52 0.40 -5.19 15 6 H -0.29 -6.07 7.11 56.52 0.40 -5.66 15 7 C -0.51 -12.35 8.81 -37.89 -0.33 -12.69 15 8 H 0.08 1.89 7.00 -52.49 -0.37 1.52 15 9 C 0.08 1.92 5.15 -106.64 -0.55 1.37 15 10 C -0.23 -5.31 7.21 -39.29 -0.28 -5.59 15 11 C -0.06 -1.31 9.31 -39.98 -0.37 -1.68 15 12 C -0.28 -5.89 5.47 -104.41 -0.57 -6.46 15 13 C 0.52 9.93 3.36 36.01 0.12 10.05 15 14 F -0.19 -3.65 17.30 2.25 0.04 -3.61 15 15 F -0.19 -3.57 16.43 2.25 0.04 -3.54 15 16 F -0.19 -3.59 16.43 2.25 0.04 -3.55 15 17 C -0.11 -2.40 8.68 -39.42 -0.34 -2.74 15 18 C 0.13 2.80 6.73 -83.29 -0.56 2.24 15 19 N -0.60 -11.48 6.55 32.72 0.21 -11.26 15 20 N -0.60 -9.32 9.59 60.35 0.58 -8.74 15 21 H 0.29 6.97 8.73 -40.82 -0.36 6.61 15 22 H 0.12 2.58 4.41 -52.49 -0.23 2.35 15 23 H 0.10 2.00 7.57 -52.49 -0.40 1.60 15 24 H 0.11 2.22 6.55 -52.48 -0.34 1.88 15 25 H 0.40 7.50 7.13 -185.16 -1.32 6.18 15 26 H 0.34 4.13 9.21 -181.36 -1.67 2.46 15 27 H 0.32 4.64 8.43 -181.37 -1.53 3.11 15 LS Contribution 244.60 15.07 3.69 3.69 Total: -1.00 -25.76 244.60 -6.92 -32.68 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.05 Total: 9.64 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -2.99 Total: -14.54 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 1.55 Total: -39.50 kcal Atomic # 9 Polarization: -10.82 SS G_CDS: 0.11 Total: -10.70 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.23 Total: 18.74 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -25.76 -6.92 -32.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.765 kcal (2) G-P(sol) polarization free energy of solvation -25.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds