Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48502 * 109.46889 * 90.00214 * 3 2 1 5 5 H 1.48499 * 109.46810 * 209.99803 * 3 2 1 6 6 H 1.48496 * 109.47305 * 329.99996 * 3 2 1 7 7 C 1.39926 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99423 * 17.41105 * 7 2 1 9 9 C 1.41041 * 120.00398 * 197.41424 * 7 2 1 10 10 C 1.40728 * 120.30444 * 29.07128 * 9 7 2 11 11 C 1.36453 * 119.94745 * 179.74500 * 10 9 7 12 12 C 1.38903 * 120.59725 * 0.56232 * 11 10 9 13 13 C 1.50699 * 119.68381 * 179.71899 * 12 11 10 14 14 F 1.39908 * 109.46792 * 269.97589 * 13 12 11 15 15 F 1.39896 * 109.47615 * 29.97498 * 13 12 11 16 16 F 1.39903 * 109.47140 * 149.97807 * 13 12 11 17 17 C 1.38154 * 120.62679 * 359.69167 * 12 11 10 18 18 C 1.38758 * 120.02865 * 0.02562 * 17 12 11 19 19 N 1.38729 * 120.29709 * 179.97438 * 18 17 12 20 20 N 1.36600 * 119.99888 * 0.02562 * 19 18 17 21 21 H 0.96996 * 119.99945 * 175.40418 * 1 2 3 22 22 H 1.07994 * 120.02647 * 0.02562 * 10 9 7 23 23 H 1.08001 * 119.69934 * 180.27917 * 11 10 9 24 24 H 1.08007 * 119.98825 * 180.02562 * 17 12 11 25 25 H 0.97000 * 120.00402 * 180.02562 * 19 18 17 26 26 H 1.00900 * 111.00133 * 179.97438 * 20 19 18 27 27 H 1.00898 * 111.00501 * 303.95652 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 1.4001 5 1 3.5404 1.4401 -0.7000 6 1 1.4403 2.6527 -0.7000 7 6 2.0085 -1.2118 -0.0005 8 1 1.5056 -2.1255 -0.2808 9 6 3.3705 -1.2400 0.3650 10 6 3.8821 -0.2931 1.2717 11 6 5.1998 -0.3303 1.6242 12 6 6.0486 -1.2896 1.0870 13 6 7.5017 -1.3079 1.4859 14 9 8.2361 -0.5021 0.6092 15 9 7.6336 -0.8188 2.7900 16 9 7.9845 -2.6197 1.4289 17 6 5.5732 -2.2275 0.1908 18 6 4.2365 -2.2172 -0.1813 19 7 3.7533 -3.1560 -1.0812 20 7 4.5944 -4.0964 -1.6046 21 1 -0.4850 -0.8373 -0.0673 22 1 3.2314 0.4596 1.6916 23 1 5.5872 0.3955 2.3239 24 1 6.2422 -2.9690 -0.2202 25 1 2.8182 -3.1446 -1.3387 26 1 4.1033 -4.7073 -2.2400 27 1 5.3847 -3.6627 -2.0578 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396059770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = -130.201459 kcal Electronic energy + Delta-G solvation = -17857.102767 eV Core-core repulsion = 14392.254010 eV Total energy + Delta-G solvation = -3464.848757 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.93993 -48.46455 -48.40733 -40.28205 -37.26806 -35.83681 -32.93196 -31.58188 -28.46200 -27.92952 -24.91174 -23.20843 -22.11548 -20.21452 -19.59378 -19.28012 -19.13891 -18.15439 -16.98038 -16.45483 -16.22626 -15.55296 -15.40210 -15.30741 -15.19226 -14.90196 -14.68141 -14.61064 -14.41240 -14.35284 -13.73687 -13.40727 -12.70272 -12.54647 -12.42834 -11.93762 -11.72978 -11.36303 -10.96268 -10.08869 -9.76338 -9.32799 -8.09927 -6.44147 0.45717 0.92785 1.40729 1.54963 1.78785 1.95764 2.17592 2.42756 2.52054 3.15344 3.29769 3.36673 3.76719 4.22896 4.29557 4.50217 4.82565 4.85805 5.26240 5.28739 5.44055 5.60469 5.75901 5.79659 5.97542 6.25950 6.43545 6.65635 7.01535 7.57325 7.98217 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023995 B = 0.009223 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.631512 B = 3035.039548 C = 3876.699311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.017 3.983 3 Si 1.098 2.902 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.285 1.285 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.057 3.943 10 C -0.236 4.236 11 C -0.072 4.072 12 C -0.269 4.269 13 C 0.524 3.476 14 F -0.188 7.188 15 F -0.185 7.185 16 F -0.186 7.186 17 C -0.121 4.121 18 C 0.124 3.876 19 N -0.600 5.600 20 N -0.603 5.603 21 H 0.281 0.719 22 H 0.116 0.884 23 H 0.127 0.873 24 H 0.127 0.873 25 H 0.401 0.599 26 H 0.364 0.636 27 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 -1.744 -1.551 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.199 4.199 3 Si 0.920 3.080 4 H -0.183 1.183 5 H -0.187 1.187 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.080 0.920 9 C 0.051 3.949 10 C -0.256 4.256 11 C -0.092 4.092 12 C -0.272 4.272 13 C 0.470 3.530 14 F -0.170 7.170 15 F -0.167 7.167 16 F -0.167 7.167 17 C -0.146 4.146 18 C 0.022 3.978 19 N -0.326 5.326 20 N -0.229 5.229 21 H 0.092 0.908 22 H 0.134 0.866 23 H 0.145 0.855 24 H 0.145 0.855 25 H 0.240 0.760 26 H 0.178 0.822 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.993 -0.541 -0.824 9.047 hybrid contribution -0.641 -1.661 -1.124 2.106 sum 8.351 -2.202 -1.948 8.854 Atomic orbital electron populations 1.70629 1.08536 1.32808 1.34010 1.28122 0.95660 1.06494 0.89588 0.83263 0.74747 0.70919 0.79100 1.18270 1.18667 1.21186 1.20377 0.95459 0.96339 1.43380 0.91950 1.17676 0.92900 0.92247 0.92094 1.20675 0.96117 1.04784 1.04070 1.20182 0.93126 0.97157 0.98771 1.19157 0.90967 1.05985 1.11110 1.18173 0.88013 0.72802 0.74024 1.93158 1.80109 1.74068 1.69659 1.93115 1.96723 1.88079 1.38751 1.93119 1.90024 1.37454 1.96142 1.19860 0.94275 0.99891 1.00541 1.17652 0.92116 0.93429 0.94649 1.42714 1.08848 1.33243 1.47815 1.60090 1.07247 1.13053 1.42496 0.90795 0.86627 0.85487 0.85546 0.76039 0.82173 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.95 13.66 21.83 0.30 -42.65 15 2 C 0.02 0.82 5.42 85.24 0.46 1.28 15 3 Si 1.10 45.87 24.90 68.60 1.71 47.57 15 4 H -0.26 -9.97 6.44 99.48 0.64 -9.33 15 5 H -0.26 -10.89 7.02 99.48 0.70 -10.19 15 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.53 -26.06 8.81 23.37 0.21 -25.86 15 8 H 0.06 3.16 7.00 -2.91 -0.02 3.14 15 9 C 0.06 2.68 5.15 -21.17 -0.11 2.58 15 10 C -0.24 -10.55 7.21 22.46 0.16 -10.39 15 11 C -0.07 -2.95 9.31 22.01 0.21 -2.74 15 12 C -0.27 -10.69 5.47 -19.73 -0.11 -10.80 15 13 C 0.52 18.45 3.36 71.24 0.24 18.69 15 14 F -0.19 -6.47 17.30 44.97 0.78 -5.69 15 15 F -0.19 -6.29 16.43 44.97 0.74 -5.55 15 16 F -0.19 -6.38 16.43 44.97 0.74 -5.64 15 17 C -0.12 -4.87 8.68 22.37 0.19 -4.68 15 18 C 0.12 5.32 6.73 38.99 0.26 5.58 15 19 N -0.60 -22.18 6.55 -50.39 -0.33 -22.51 15 20 N -0.60 -17.30 9.59 37.02 0.36 -16.94 15 21 H 0.28 14.18 8.73 -92.71 -0.81 13.37 15 22 H 0.12 5.07 4.41 -2.91 -0.01 5.05 15 23 H 0.13 4.50 7.57 -2.91 -0.02 4.48 15 24 H 0.13 4.66 6.55 -2.91 -0.02 4.64 15 25 H 0.40 14.85 7.13 -215.50 -1.54 13.31 15 26 H 0.36 7.91 9.21 -210.56 -1.94 5.97 15 27 H 0.33 8.71 8.43 -210.56 -1.77 6.94 15 Total: -1.00 -52.93 244.60 1.71 -51.22 By element: Atomic # 1 Polarization: 30.61 SS G_CDS: -4.09 Total: 26.53 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 1.51 Total: -26.34 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: 0.32 Total: -82.10 kcal Atomic # 9 Polarization: -19.14 SS G_CDS: 2.26 Total: -16.88 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.71 Total: 47.57 kcal Total: -52.93 1.71 -51.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396059770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.986 kcal (2) G-P(sol) polarization free energy of solvation -52.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds