Wall clock time and date at job start Mon Mar 30 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38264 * 119.93461 * 269.72057 * 10 9 7 12 12 C 1.38179 * 120.09375 * 179.77027 * 11 10 9 13 13 C 1.38655 * 119.96828 * 0.50833 * 12 11 10 14 14 O 1.35961 * 120.06106 * 179.72652 * 13 12 11 15 15 C 1.42894 * 117.00229 * 0.02562 * 14 13 12 16 16 F 1.39897 * 109.47113 * 300.00500 * 15 14 13 17 17 F 1.39903 * 109.46882 * 60.00279 * 15 14 13 18 18 C 1.38908 * 119.87626 * 359.74529 * 13 12 11 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 13 12 20 20 C 1.38250 * 119.93793 * 90.00078 * 10 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08002 * 119.95263 * 0.02562 * 11 10 9 25 25 H 1.08005 * 120.01372 * 180.25149 * 12 11 10 26 26 H 1.08993 * 109.47518 * 180.02562 * 15 14 13 27 27 H 1.08005 * 119.98588 * 359.95352 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2443 -3.2611 1.2111 12 6 4.7003 -4.5655 1.2195 13 6 4.9372 -5.2240 0.0225 14 8 5.3912 -6.5056 0.0286 15 6 5.6020 -7.1132 1.3046 16 9 6.5498 -6.3752 2.0217 17 9 4.3964 -7.1382 2.0140 18 6 4.7103 -4.5719 -1.1827 19 9 4.9405 -5.2101 -2.3511 20 6 4.2488 -3.2678 -1.1851 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 4.0637 -2.7470 2.1436 25 1 4.8760 -5.0703 2.1580 26 1 5.9639 -8.1320 1.1667 27 1 4.0716 -2.7596 -2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396076485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:10 Heat of formation + Delta-G solvation = -172.267527 kcal Electronic energy + Delta-G solvation = -17392.721488 eV Core-core repulsion = 13893.755858 eV Total energy + Delta-G solvation = -3498.965630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.42118 -48.51948 -47.41192 -39.60589 -37.50635 -33.27231 -31.26127 -30.28284 -27.87484 -25.84873 -23.03909 -22.70986 -20.71022 -19.02017 -18.19985 -17.98932 -16.86254 -16.43673 -16.29241 -15.47142 -15.45922 -14.45208 -14.36227 -13.97842 -13.82692 -13.72707 -13.61087 -13.17120 -12.77642 -12.64784 -12.31305 -11.91600 -11.61637 -11.32135 -10.97403 -10.53939 -10.16917 -10.04150 -9.45475 -8.65374 -8.54266 -7.80825 -6.13821 -4.14504 1.50476 1.57879 2.51878 3.24561 3.32867 3.34221 3.36865 3.95325 4.19311 4.35421 4.45768 4.54940 5.01631 5.16571 5.22913 5.55391 5.69353 5.73637 6.18506 6.39470 6.59424 6.67451 6.73258 6.90621 7.31182 7.33946 7.59537 8.40621 8.90624 9.45220 10.98861 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034591 B = 0.005793 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.266855 B = 4832.648053 C = 5119.049605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.020 4.020 11 C -0.094 4.094 12 C -0.161 4.161 13 C 0.040 3.960 14 O -0.319 6.319 15 C 0.412 3.588 16 F -0.201 7.201 17 F -0.198 7.198 18 C 0.086 3.914 19 F -0.138 7.138 20 C -0.125 4.125 21 H 0.265 0.735 22 H 0.028 0.972 23 H 0.034 0.966 24 H 0.134 0.866 25 H 0.135 0.865 26 H 0.179 0.821 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.339 -11.810 2.339 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.093 0.907 9 C -0.022 4.022 10 C -0.020 4.020 11 C -0.113 4.113 12 C -0.179 4.179 13 C -0.004 4.004 14 O -0.237 6.237 15 C 0.322 3.678 16 F -0.183 7.183 17 F -0.180 7.180 18 C 0.066 3.934 19 F -0.117 7.117 20 C -0.143 4.143 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.052 0.948 24 H 0.152 0.848 25 H 0.153 0.847 26 H 0.195 0.805 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.215 -11.814 2.174 17.132 hybrid contribution 0.233 0.777 0.133 0.822 sum 12.449 -11.037 2.307 16.796 Atomic orbital electron populations 1.69893 1.06286 1.27125 1.50147 1.24993 0.94750 0.99051 0.94314 0.86804 0.80386 0.83594 0.78728 1.20072 1.21174 1.18854 1.20900 0.87977 0.94846 1.51941 0.90676 1.18839 0.97676 0.87712 0.97941 1.20196 0.92298 0.98532 0.91021 1.20987 0.98016 0.93272 0.98983 1.21326 1.04034 0.96858 0.95719 1.18644 1.03935 0.83708 0.94070 1.86597 1.81453 1.26447 1.29185 1.23300 0.74739 0.94330 0.75463 1.93088 1.65208 1.80567 1.79390 1.93108 1.48144 1.97096 1.79681 1.16919 1.06179 0.91624 0.78677 1.91458 1.92729 1.81801 1.45694 1.20992 1.00974 0.91763 1.00596 0.92464 0.95358 0.94823 0.84798 0.84738 0.80483 0.83853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.96 55.43 0.77 -26.16 15 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 15 3 Si 0.88 20.71 27.47 -169.99 -4.67 16.04 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 15 7 C -0.52 -14.26 9.65 -34.44 -0.33 -14.59 15 8 H 0.08 2.27 7.98 -52.49 -0.42 1.85 15 9 C 0.02 0.35 4.17 -29.03 -0.12 0.23 15 10 C -0.02 -0.41 5.07 -104.61 -0.53 -0.94 15 11 C -0.09 -1.72 9.69 -39.59 -0.38 -2.11 15 12 C -0.16 -2.69 8.26 -39.45 -0.33 -3.01 15 13 C 0.04 0.68 6.49 -39.18 -0.25 0.42 15 14 O -0.32 -4.63 10.30 -19.62 -0.20 -4.83 15 15 C 0.41 4.31 5.98 101.05 0.60 4.92 15 16 F -0.20 -2.35 15.58 2.25 0.04 -2.31 15 17 F -0.20 -2.46 15.59 2.25 0.04 -2.42 15 18 C 0.09 1.55 7.31 -39.30 -0.29 1.27 15 19 F -0.14 -2.46 17.11 2.25 0.04 -2.42 15 20 C -0.12 -2.36 9.67 -39.54 -0.38 -2.74 15 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 22 H 0.03 0.62 7.52 -51.93 -0.39 0.23 15 23 H 0.03 0.75 7.13 -51.93 -0.37 0.38 15 24 H 0.13 2.27 8.06 -52.49 -0.42 1.84 15 25 H 0.13 2.00 5.10 -52.48 -0.27 1.74 15 26 H 0.18 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.14 2.55 8.06 -52.48 -0.42 2.13 15 LS Contribution 252.81 15.07 3.81 3.81 Total: -1.00 -30.88 252.81 -4.17 -35.05 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -1.88 Total: -2.12 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.11 Total: -14.64 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.77 Total: -26.16 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.20 Total: -4.83 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 0.11 Total: -7.15 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.67 Total: 16.04 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.88 -4.17 -35.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.218 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds