Wall clock time and date at job start Mon Mar 30 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38264 * 119.93461 * 269.72057 * 10 9 7 12 12 C 1.38179 * 120.09375 * 179.77027 * 11 10 9 13 13 C 1.38655 * 119.96828 * 0.50833 * 12 11 10 14 14 O 1.35961 * 120.06106 * 179.72652 * 13 12 11 15 15 C 1.42894 * 117.00229 * 0.02562 * 14 13 12 16 16 F 1.39897 * 109.47113 * 300.00500 * 15 14 13 17 17 F 1.39903 * 109.46882 * 60.00279 * 15 14 13 18 18 C 1.38908 * 119.87626 * 359.74529 * 13 12 11 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 13 12 20 20 C 1.38250 * 119.93793 * 90.00078 * 10 9 7 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.08002 * 119.95263 * 0.02562 * 11 10 9 25 25 H 1.08005 * 120.01372 * 180.25149 * 12 11 10 26 26 H 1.08993 * 109.47518 * 180.02562 * 15 14 13 27 27 H 1.08005 * 119.98588 * 359.95352 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2443 -3.2611 1.2111 12 6 4.7003 -4.5655 1.2195 13 6 4.9372 -5.2240 0.0225 14 8 5.3912 -6.5056 0.0286 15 6 5.6020 -7.1132 1.3046 16 9 6.5498 -6.3752 2.0217 17 9 4.3964 -7.1382 2.0140 18 6 4.7103 -4.5719 -1.1827 19 9 4.9405 -5.2101 -2.3511 20 6 4.2488 -3.2678 -1.1851 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 4.0637 -2.7470 2.1436 25 1 4.8760 -5.0703 2.1580 26 1 5.9639 -8.1320 1.1667 27 1 4.0716 -2.7596 -2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396076485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:09 Heat of formation + Delta-G solvation = -191.404118 kcal Electronic energy + Delta-G solvation = -17393.551313 eV Core-core repulsion = 13893.755858 eV Total energy + Delta-G solvation = -3499.795454 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.31540 -49.92208 -48.31070 -40.90081 -38.82347 -35.22477 -33.01487 -31.70169 -29.45565 -27.00961 -24.72404 -24.07832 -22.27379 -20.15107 -19.23009 -18.97881 -18.90085 -17.89716 -17.48556 -16.83763 -16.71095 -16.33900 -15.48028 -15.37677 -14.94780 -14.83442 -14.76321 -14.61592 -14.32984 -14.09702 -13.76788 -13.32808 -13.22616 -12.82564 -12.50600 -12.22397 -11.83100 -11.80278 -11.54560 -10.77911 -9.96821 -9.26124 -8.28747 -6.35044 0.08070 0.15442 1.40529 1.41789 1.51671 1.53311 2.37080 2.50759 2.53108 3.04517 3.09301 3.47223 3.68641 3.69048 3.86313 4.11346 4.29682 4.34919 4.77513 4.88160 5.05049 5.08658 5.17744 5.36294 5.56550 5.72746 5.94504 6.25168 6.71633 7.28707 8.87664 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034591 B = 0.005793 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.266855 B = 4832.648053 C = 5119.049605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.239 1.239 7 C -0.524 4.524 8 H 0.029 0.971 9 C 0.021 3.979 10 C -0.049 4.049 11 C -0.096 4.096 12 C -0.158 4.158 13 C 0.050 3.950 14 O -0.326 6.326 15 C 0.406 3.594 16 F -0.207 7.207 17 F -0.210 7.210 18 C 0.072 3.928 19 F -0.137 7.137 20 C -0.128 4.128 21 H 0.268 0.732 22 H 0.038 0.962 23 H 0.044 0.956 24 H 0.144 0.856 25 H 0.155 0.845 26 H 0.241 0.759 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.446 -12.256 2.883 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.562 4.562 8 H 0.047 0.953 9 C -0.016 4.016 10 C -0.049 4.049 11 C -0.114 4.114 12 C -0.177 4.177 13 C 0.006 3.994 14 O -0.244 6.244 15 C 0.317 3.683 16 F -0.189 7.189 17 F -0.192 7.192 18 C 0.052 3.948 19 F -0.116 7.116 20 C -0.147 4.147 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.162 0.838 25 H 0.172 0.828 26 H 0.257 0.743 27 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.348 -12.285 2.724 19.084 hybrid contribution -0.428 0.718 -0.012 0.836 sum 13.920 -11.567 2.712 18.301 Atomic orbital electron populations 1.70058 1.08440 1.28341 1.52073 1.25986 0.95569 1.03450 0.93850 0.85650 0.79699 0.77944 0.79350 1.19125 1.21145 1.16254 1.21146 0.90703 0.93113 1.51205 0.95291 1.18695 0.94301 0.89924 0.98681 1.20043 0.94739 0.97836 0.92292 1.21151 0.97511 0.93972 0.98765 1.21496 1.03398 0.96252 0.96507 1.18742 1.02244 0.84807 0.93609 1.86619 1.80874 1.24884 1.32041 1.24369 0.74090 0.96056 0.73784 1.93076 1.65303 1.81050 1.79428 1.93087 1.49126 1.97110 1.79849 1.16956 1.06879 0.91617 0.79300 1.91453 1.92772 1.81686 1.45702 1.21037 1.00828 0.92339 1.00470 0.92337 0.94349 0.93771 0.83772 0.82776 0.74298 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.60 13.96 21.45 0.30 -58.30 15 2 C 0.01 0.49 5.47 84.66 0.46 0.96 15 3 Si 0.95 42.31 27.47 68.60 1.88 44.19 15 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 15 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 15 7 C -0.52 -29.40 9.65 25.60 0.25 -29.15 15 8 H 0.03 1.83 7.98 -2.91 -0.02 1.81 15 9 C 0.02 0.95 4.17 29.10 0.12 1.07 15 10 C -0.05 -1.95 5.07 -19.86 -0.10 -2.05 15 11 C -0.10 -3.41 9.69 22.26 0.22 -3.19 15 12 C -0.16 -5.01 8.26 22.36 0.18 -4.83 15 13 C 0.05 1.62 6.49 22.53 0.15 1.77 15 14 O -0.33 -8.61 10.30 -93.11 -0.96 -9.57 15 15 C 0.41 7.09 5.98 113.37 0.68 7.77 15 16 F -0.21 -4.19 15.58 44.97 0.70 -3.49 15 17 F -0.21 -4.63 15.59 44.97 0.70 -3.92 15 18 C 0.07 2.56 7.31 22.45 0.16 2.72 15 19 F -0.14 -4.76 17.11 44.97 0.77 -3.99 15 20 C -0.13 -4.82 9.67 22.29 0.22 -4.61 15 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 22 H 0.04 1.63 7.52 -2.38 -0.02 1.62 15 23 H 0.04 1.88 7.13 -2.39 -0.02 1.86 15 24 H 0.14 4.71 8.06 -2.91 -0.02 4.69 15 25 H 0.15 4.22 5.10 -2.91 -0.01 4.21 15 26 H 0.24 1.15 8.14 -2.39 -0.02 1.13 15 27 H 0.15 5.24 8.06 -2.91 -0.02 5.22 15 Total: -1.00 -67.95 252.81 6.89 -61.07 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: 1.15 Total: 3.55 kcal Atomic # 6 Polarization: -31.87 SS G_CDS: 2.33 Total: -29.54 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.30 Total: -58.30 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.96 Total: -9.57 kcal Atomic # 9 Polarization: -13.58 SS G_CDS: 2.17 Total: -11.40 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 1.88 Total: 44.19 kcal Total: -67.95 6.89 -61.07 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.335 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds