Wall clock time and date at job start Mon Mar 30 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48494 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00375 * 3 2 1 6 6 H 1.48500 * 109.46884 * 59.99924 * 3 2 1 7 7 C 1.37881 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.95534 * 90.00460 * 10 9 7 12 12 C 1.38475 * 120.08109 * 180.02562 * 11 10 9 13 13 F 1.35093 * 119.99765 * 180.02562 * 12 11 10 14 14 C 1.38390 * 120.00537 * 359.97222 * 12 11 10 15 15 C 1.38671 * 119.91933 * 0.02562 * 14 12 11 16 16 O 1.35896 * 120.03984 * 179.97438 * 15 14 12 17 17 C 1.42905 * 117.00039 * 359.97438 * 16 15 14 18 18 F 1.39895 * 109.47068 * 300.00158 * 17 16 15 19 19 F 1.39897 * 109.46886 * 60.00372 * 17 16 15 20 20 C 1.38133 * 119.95930 * 270.25936 * 10 9 7 21 21 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47015 * 60.00412 * 9 7 2 23 23 H 1.08997 * 109.47380 * 300.00346 * 9 7 2 24 24 H 1.07995 * 119.95930 * 0.02562 * 11 10 9 25 25 H 1.07996 * 120.03780 * 180.02562 * 14 12 11 26 26 H 1.09001 * 109.47103 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.00782 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6789 -4.1694 1.1973 12 6 3.5791 -5.2216 1.2004 13 9 4.0159 -5.7334 2.3718 14 6 4.0306 -5.7496 0.0034 15 6 3.5808 -5.2233 -1.1981 16 8 4.0229 -5.7396 -2.3749 17 6 4.9511 -6.8236 -2.2998 18 9 6.0990 -6.4081 -1.6167 19 9 4.3637 -7.8939 -1.6169 20 6 2.6827 -4.1654 -1.1973 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.3267 -3.7582 2.1318 25 1 4.7324 -6.5704 0.0052 26 1 5.2219 -7.1404 -3.3070 27 1 2.3350 -3.7516 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396076500.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:12 Heat of formation + Delta-G solvation = -178.496941 kcal Electronic energy + Delta-G solvation = -17342.664214 eV Core-core repulsion = 13843.428457 eV Total energy + Delta-G solvation = -3499.235757 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.40658 -48.55792 -47.39722 -39.66758 -37.27290 -33.38662 -31.20754 -29.86541 -27.32199 -26.07517 -23.56759 -22.28779 -21.01132 -18.57080 -18.25690 -17.96328 -16.48674 -16.26792 -15.91002 -15.55471 -15.29989 -14.87557 -14.54397 -14.43827 -13.90240 -13.68934 -13.52488 -12.81170 -12.62567 -12.48210 -12.29244 -11.42740 -11.34446 -11.20144 -10.93033 -10.64819 -10.60483 -9.76270 -9.52558 -8.50760 -8.16143 -8.06820 -6.12819 -4.17271 1.59661 1.65382 2.58245 3.26154 3.34117 3.38982 3.39878 4.00428 4.20296 4.39929 4.56968 4.57872 5.10739 5.22200 5.29292 5.45666 5.79631 5.97074 6.29059 6.45239 6.61505 6.86081 6.92211 7.34886 7.46080 7.62355 7.82780 8.18063 8.87594 9.47387 10.97264 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.005885 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.902211 B = 4756.390100 C = 5093.086600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.047 3.953 10 C 0.026 3.974 11 C -0.177 4.177 12 C 0.129 3.871 13 F -0.143 7.143 14 C -0.255 4.255 15 C 0.126 3.874 16 O -0.317 6.317 17 C 0.410 3.590 18 F -0.200 7.200 19 F -0.201 7.201 20 C -0.145 4.145 21 H 0.263 0.737 22 H 0.037 0.963 23 H 0.037 0.963 24 H 0.137 0.863 25 H 0.135 0.865 26 H 0.179 0.821 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -12.615 -4.124 15.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.010 3.990 10 C 0.026 3.974 11 C -0.196 4.196 12 C 0.109 3.891 13 F -0.122 7.122 14 C -0.274 4.274 15 C 0.083 3.917 16 O -0.235 6.235 17 C 0.320 3.680 18 F -0.182 7.182 19 F -0.183 7.183 20 C -0.164 4.164 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.155 0.845 25 H 0.153 0.847 26 H 0.196 0.804 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.774 -12.479 -4.228 15.299 hybrid contribution 0.767 0.599 0.470 1.081 sum 8.542 -11.881 -3.758 15.107 Atomic orbital electron populations 1.69957 1.06049 1.26953 1.50062 1.24998 0.94905 0.99347 0.94913 0.86441 0.80155 0.83228 0.77694 1.19587 1.20853 1.20865 1.21043 0.93185 0.89521 1.51666 0.92176 1.18453 0.92315 0.88982 0.99211 1.20421 0.93763 0.93311 0.89908 1.21135 1.00450 0.97527 1.00474 1.17340 0.96555 0.94857 0.80314 1.91453 1.88364 1.86265 1.46090 1.21107 1.08456 1.06495 0.91373 1.18529 0.95775 0.94699 0.82716 1.86624 1.58660 1.47738 1.30441 1.23326 0.75215 0.76403 0.93089 1.93096 1.51541 1.90216 1.83315 1.93090 1.84458 1.57355 1.83361 1.20482 0.99581 0.96216 1.00090 0.92725 0.94465 0.94518 0.84509 0.84715 0.80440 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 13.29 55.43 0.74 -24.80 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 15 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.52 -13.96 9.09 -34.44 -0.31 -14.28 15 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 9 C 0.05 1.16 5.10 -29.03 -0.15 1.01 15 10 C 0.03 0.55 5.07 -104.65 -0.53 0.02 15 11 C -0.18 -3.48 9.68 -39.49 -0.38 -3.87 15 12 C 0.13 2.38 7.30 -39.44 -0.29 2.09 15 13 F -0.14 -2.55 17.27 2.25 0.04 -2.51 15 14 C -0.25 -4.44 8.24 -39.37 -0.32 -4.76 15 15 C 0.13 2.19 6.48 -39.23 -0.25 1.94 15 16 O -0.32 -4.58 10.43 -19.41 -0.20 -4.79 15 17 C 0.41 4.38 5.98 101.05 0.60 4.98 15 18 F -0.20 -2.51 15.58 2.25 0.04 -2.47 15 19 F -0.20 -2.44 15.58 2.25 0.04 -2.41 15 20 C -0.15 -2.78 9.64 -39.42 -0.38 -3.16 15 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 22 H 0.04 0.94 8.09 -51.93 -0.42 0.52 15 23 H 0.04 0.94 8.08 -51.93 -0.42 0.52 15 24 H 0.14 2.59 8.06 -52.49 -0.42 2.17 15 25 H 0.14 2.16 5.10 -52.49 -0.27 1.89 15 26 H 0.18 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.14 2.53 8.06 -52.49 -0.42 2.11 15 LS Contribution 256.60 15.07 3.87 3.87 Total: -1.00 -29.57 256.60 -4.54 -34.11 By element: Atomic # 1 Polarization: -0.65 SS G_CDS: -1.92 Total: -2.56 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -2.11 Total: -14.47 kcal Atomic # 7 Polarization: -25.54 SS G_CDS: 0.74 Total: -24.80 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.20 Total: -4.79 kcal Atomic # 9 Polarization: -7.50 SS G_CDS: 0.11 Total: -7.39 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.57 -4.54 -34.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076500.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.390 kcal (2) G-P(sol) polarization free energy of solvation -29.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds