Wall clock time and date at job start Mon Mar 30 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00097 * 2 1 4 4 H 1.48494 * 109.47016 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47191 * 300.00375 * 3 2 1 6 6 H 1.48500 * 109.46884 * 59.99924 * 3 2 1 7 7 C 1.37881 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99776 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99889 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46962 * 180.02562 * 9 7 2 11 11 C 1.38254 * 119.95534 * 90.00460 * 10 9 7 12 12 C 1.38475 * 120.08109 * 180.02562 * 11 10 9 13 13 F 1.35093 * 119.99765 * 180.02562 * 12 11 10 14 14 C 1.38390 * 120.00537 * 359.97222 * 12 11 10 15 15 C 1.38671 * 119.91933 * 0.02562 * 14 12 11 16 16 O 1.35896 * 120.03984 * 179.97438 * 15 14 12 17 17 C 1.42905 * 117.00039 * 359.97438 * 16 15 14 18 18 F 1.39895 * 109.47068 * 300.00158 * 17 16 15 19 19 F 1.39897 * 109.46886 * 60.00372 * 17 16 15 20 20 C 1.38133 * 119.95930 * 270.25936 * 10 9 7 21 21 H 0.97002 * 119.99944 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.47015 * 60.00412 * 9 7 2 23 23 H 1.08997 * 109.47380 * 300.00346 * 9 7 2 24 24 H 1.07995 * 119.95930 * 0.02562 * 11 10 9 25 25 H 1.07996 * 120.03780 * 180.02562 * 14 12 11 26 26 H 1.09001 * 109.47103 * 179.97438 * 17 16 15 27 27 H 1.07997 * 120.00782 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.6789 -4.1694 1.1973 12 6 3.5791 -5.2216 1.2004 13 9 4.0159 -5.7334 2.3718 14 6 4.0306 -5.7496 0.0034 15 6 3.5808 -5.2233 -1.1981 16 8 4.0229 -5.7396 -2.3749 17 6 4.9511 -6.8236 -2.2998 18 9 6.0990 -6.4081 -1.6167 19 9 4.3637 -7.8939 -1.6169 20 6 2.6827 -4.1654 -1.1973 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.3267 -3.7582 2.1318 25 1 4.7324 -6.5704 0.0052 26 1 5.2219 -7.1404 -3.3070 27 1 2.3350 -3.7516 -2.1322 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396076500.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:12 Heat of formation + Delta-G solvation = -195.478773 kcal Electronic energy + Delta-G solvation = -17343.400601 eV Core-core repulsion = 13843.428457 eV Total energy + Delta-G solvation = -3499.972145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.32232 -50.00879 -48.31300 -41.00861 -38.64872 -35.34409 -32.96623 -31.28301 -29.15471 -27.09144 -25.43823 -23.69837 -22.51673 -19.78427 -19.35564 -18.89533 -18.51772 -17.66293 -17.37298 -16.95698 -16.74620 -16.46652 -16.09288 -15.53179 -14.94263 -14.77694 -14.64907 -14.48732 -14.30293 -13.98058 -13.58646 -13.15932 -12.95673 -12.77022 -12.51397 -12.48391 -12.33767 -11.61793 -11.48000 -10.61229 -9.74974 -9.51899 -8.22034 -6.34161 0.09600 0.16460 1.41440 1.42972 1.55034 1.56402 2.37045 2.52389 2.55646 3.07378 3.12340 3.55010 3.68615 3.69221 3.87308 3.97120 4.28184 4.44560 4.83551 4.93213 5.03355 5.19176 5.31791 5.45217 5.72425 5.80466 5.96040 6.13199 6.77433 7.34591 8.88262 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.005885 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.902211 B = 4756.390100 C = 5093.086600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.010 3.990 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.056 0.944 9 C 0.055 3.945 10 C 0.008 3.992 11 C -0.187 4.187 12 C 0.130 3.870 13 F -0.138 7.138 14 C -0.247 4.247 15 C 0.138 3.862 16 O -0.320 6.320 17 C 0.403 3.597 18 F -0.210 7.210 19 F -0.209 7.209 20 C -0.153 4.153 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.016 0.984 24 H 0.135 0.865 25 H 0.153 0.847 26 H 0.244 0.756 27 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.674 -13.333 -4.985 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.074 0.926 9 C 0.018 3.982 10 C 0.008 3.992 11 C -0.205 4.205 12 C 0.110 3.890 13 F -0.117 7.117 14 C -0.267 4.267 15 C 0.095 3.905 16 O -0.237 6.237 17 C 0.315 3.685 18 F -0.192 7.192 19 F -0.191 7.191 20 C -0.171 4.171 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.153 0.847 25 H 0.170 0.830 26 H 0.259 0.741 27 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.517 -13.216 -5.092 17.064 hybrid contribution 0.273 0.695 0.703 1.025 sum 9.790 -12.522 -4.388 16.489 Atomic orbital electron populations 1.70063 1.07529 1.28018 1.50950 1.25846 0.95728 1.02896 0.94450 0.85408 0.78921 0.78874 0.77931 1.19060 1.20099 1.20320 1.21345 0.93191 0.90911 1.51452 0.92552 1.18189 0.92620 0.90039 0.97315 1.20049 0.94418 0.93342 0.91399 1.21080 1.01192 0.98301 0.99976 1.17299 0.96247 0.94497 0.80916 1.91465 1.88205 1.86074 1.45923 1.21321 1.08051 1.06429 0.90864 1.18402 0.94581 0.93704 0.83851 1.86646 1.59365 1.48901 1.28815 1.24435 0.73770 0.74842 0.95500 1.93077 1.51962 1.90292 1.83869 1.93076 1.84600 1.57525 1.83870 1.20461 1.00208 0.97023 0.99439 0.92441 0.96171 0.96562 0.84669 0.82952 0.74082 0.84152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.97 13.29 21.45 0.28 -53.68 15 2 C 0.01 0.53 5.46 84.66 0.46 0.99 15 3 Si 0.96 43.26 29.54 68.60 2.03 45.28 15 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 15 6 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 7 C -0.53 -29.28 9.09 25.60 0.23 -29.05 15 8 H 0.06 3.08 7.74 -2.91 -0.02 3.06 15 9 C 0.06 2.82 5.10 29.10 0.15 2.96 15 10 C 0.01 0.35 5.07 -19.88 -0.10 0.25 15 11 C -0.19 -7.40 9.68 22.33 0.22 -7.18 15 12 C 0.13 4.65 7.30 22.36 0.16 4.81 15 13 F -0.14 -4.72 17.27 44.97 0.78 -3.95 15 14 C -0.25 -8.12 8.24 22.41 0.18 -7.94 15 15 C 0.14 4.58 6.48 22.50 0.15 4.73 15 16 O -0.32 -8.32 10.43 -92.39 -0.96 -9.29 15 17 C 0.40 7.06 5.98 113.37 0.68 7.74 15 18 F -0.21 -4.59 15.58 44.97 0.70 -3.88 15 19 F -0.21 -4.40 15.58 44.97 0.70 -3.70 15 20 C -0.15 -5.82 9.64 22.37 0.22 -5.60 15 21 H 0.27 14.56 8.31 -92.71 -0.77 13.79 15 22 H 0.02 1.07 8.09 -2.39 -0.02 1.05 15 23 H 0.02 0.87 8.08 -2.39 -0.02 0.85 15 24 H 0.14 5.27 8.06 -2.91 -0.02 5.24 15 25 H 0.15 4.45 5.10 -2.91 -0.01 4.43 15 26 H 0.24 1.11 8.14 -2.39 -0.02 1.09 15 27 H 0.14 5.17 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -63.56 256.60 7.08 -56.48 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: 1.21 Total: 1.01 kcal Atomic # 6 Polarization: -30.62 SS G_CDS: 2.35 Total: -28.27 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.28 Total: -53.68 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.96 Total: -9.29 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 2.18 Total: -11.53 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -63.56 7.08 -56.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076500.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.996 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds