Wall clock time and date at job start Mon Mar 30 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47392 * 269.99861 * 3 2 1 5 5 H 1.48499 * 109.47468 * 30.00280 * 3 2 1 6 6 H 1.48499 * 109.47211 * 149.99894 * 3 2 1 7 7 C 1.37870 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.38299 * 119.97944 * 264.97926 * 10 9 7 12 12 C 1.38223 * 120.12144 * 180.02562 * 11 10 9 13 13 C 1.38220 * 120.09550 * 359.96048 * 12 11 10 14 14 C 1.38620 * 119.97291 * 0.06049 * 13 12 11 15 15 O 1.35948 * 120.06345 * 180.23695 * 14 13 12 16 16 C 1.42895 * 117.00499 * 359.72155 * 15 14 13 17 17 F 1.39900 * 109.47138 * 300.00446 * 16 15 14 18 18 F 1.39906 * 109.46927 * 59.99945 * 16 15 14 19 19 C 1.38282 * 119.98584 * 84.99790 * 10 9 7 20 20 F 1.35098 * 120.04923 * 359.97438 * 19 10 9 21 21 H 0.96996 * 120.00573 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46560 * 59.99944 * 9 7 2 23 23 H 1.08995 * 109.46796 * 300.00244 * 9 7 2 24 24 H 1.07994 * 119.94334 * 0.02562 * 11 10 9 25 25 H 1.07999 * 119.95091 * 179.97438 * 12 11 10 26 26 H 1.08008 * 120.01460 * 180.02562 * 13 12 11 27 27 H 1.08996 * 109.47574 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.5999 -4.2380 -1.1939 12 6 3.4975 -5.2891 -1.1973 13 6 4.0295 -5.7500 -0.0077 14 6 3.6616 -5.1584 1.1907 15 8 4.1874 -5.6072 2.3614 16 6 5.1091 -6.6964 2.2834 17 9 4.4758 -7.8028 1.7071 18 9 6.2049 -6.3245 1.4972 19 6 2.7589 -4.1020 1.1926 20 9 2.3984 -3.5225 2.3585 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.1863 -3.8795 -2.1249 25 1 3.7837 -5.7507 -2.1307 26 1 4.7311 -6.5711 -0.0119 27 1 5.4514 -6.9552 3.2853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396076516.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:14 Heat of formation + Delta-G solvation = -174.335554 kcal Electronic energy + Delta-G solvation = -17597.494769 eV Core-core repulsion = 14098.439463 eV Total energy + Delta-G solvation = -3499.055306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.39271 -48.06572 -47.38278 -39.49730 -37.34457 -33.41813 -31.21148 -29.79807 -27.20265 -26.05982 -23.53628 -22.17305 -21.01117 -18.64184 -18.05412 -17.95865 -16.65673 -16.38211 -16.14864 -15.22494 -15.10001 -14.51536 -14.33381 -14.27504 -13.77470 -13.48727 -13.39841 -12.86785 -12.44669 -12.34155 -12.29211 -11.63527 -11.41271 -11.11421 -10.96243 -10.59610 -10.53711 -9.70887 -9.52703 -8.45255 -8.04632 -7.98843 -6.07312 -4.11508 1.60539 1.68103 2.58848 3.30266 3.36405 3.39830 3.41452 4.01745 4.24002 4.43780 4.59183 4.69210 5.06554 5.27672 5.41475 5.53777 5.68812 5.95445 6.29296 6.45478 6.69817 6.79230 6.94086 7.37832 7.50535 7.60729 7.87069 8.22864 8.91738 9.52353 11.02922 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.006047 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.472674 B = 4628.978896 C = 4770.146521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.049 3.951 10 C -0.038 4.038 11 C -0.119 4.119 12 C -0.098 4.098 13 C -0.191 4.191 14 C 0.061 3.939 15 O -0.316 6.316 16 C 0.412 3.588 17 F -0.201 7.201 18 F -0.200 7.200 19 C 0.085 3.915 20 F -0.126 7.126 21 H 0.263 0.737 22 H 0.038 0.962 23 H 0.037 0.963 24 H 0.134 0.866 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.868 -13.442 1.976 16.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.552 4.552 8 H 0.076 0.924 9 C 0.012 3.988 10 C -0.039 4.039 11 C -0.137 4.137 12 C -0.116 4.116 13 C -0.210 4.210 14 C 0.018 3.982 15 O -0.234 6.234 16 C 0.321 3.679 17 F -0.183 7.183 18 F -0.182 7.182 19 C 0.065 3.935 20 F -0.104 7.104 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.151 0.849 25 H 0.144 0.856 26 H 0.149 0.851 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.672 -13.247 2.183 15.983 hybrid contribution 0.603 0.788 -0.008 0.992 sum 9.275 -12.459 2.175 15.684 Atomic orbital electron populations 1.69948 1.06033 1.26979 1.50140 1.24977 0.94906 0.99279 0.94935 0.86493 0.79880 0.82941 0.78173 1.20519 1.21069 1.19741 1.20971 0.93010 0.89585 1.51589 0.92420 1.18365 0.92276 0.88865 0.99249 1.20739 0.96954 0.96251 0.89933 1.21024 0.98621 0.96106 0.97984 1.20907 0.96832 0.96815 0.97051 1.21140 1.04949 1.03354 0.91545 1.18848 0.97751 0.96823 0.84818 1.86638 1.57724 1.48424 1.30600 1.23320 0.76058 0.75642 0.92843 1.93083 1.82774 1.54873 1.87577 1.93090 1.55360 1.91280 1.78483 1.16853 0.99396 0.94181 0.83059 1.91486 1.90299 1.83188 1.45419 0.92720 0.94368 0.94520 0.84853 0.85566 0.85057 0.80480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 3 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 7 C -0.51 -14.50 9.09 -34.44 -0.31 -14.81 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 15 9 C 0.05 1.27 4.88 -29.03 -0.14 1.13 15 10 C -0.04 -0.83 5.07 -104.58 -0.53 -1.36 15 11 C -0.12 -2.21 9.68 -39.56 -0.38 -2.59 15 12 C -0.10 -1.55 10.04 -39.59 -0.40 -1.95 15 13 C -0.19 -3.13 8.26 -39.45 -0.33 -3.45 15 14 C 0.06 1.13 6.49 -39.18 -0.25 0.87 15 15 O -0.32 -5.06 10.30 -19.58 -0.20 -5.26 15 16 C 0.41 4.58 5.98 101.05 0.60 5.19 15 17 F -0.20 -2.43 15.60 2.25 0.04 -2.39 15 18 F -0.20 -2.49 15.57 2.25 0.04 -2.46 15 19 C 0.08 1.84 7.25 -39.30 -0.28 1.55 15 20 F -0.13 -2.92 16.41 2.25 0.04 -2.88 15 21 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 22 H 0.04 1.00 8.05 -51.93 -0.42 0.58 15 23 H 0.04 1.02 7.79 -51.93 -0.40 0.62 15 24 H 0.13 2.27 8.06 -52.49 -0.42 1.85 15 25 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.13 1.89 5.10 -52.48 -0.27 1.62 15 27 H 0.18 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 255.45 15.07 3.85 3.85 Total: -1.00 -31.46 255.45 -4.55 -36.02 By element: Atomic # 1 Polarization: -2.23 SS G_CDS: -1.90 Total: -4.13 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -2.12 Total: -13.79 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.20 Total: -5.26 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.11 Total: -7.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.46 -4.55 -36.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076516.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.319 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds