Wall clock time and date at job start Mon Mar 30 2020 06:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99669 * 2 1 4 4 H 1.48501 * 109.47392 * 269.99861 * 3 2 1 5 5 H 1.48499 * 109.47468 * 30.00280 * 3 2 1 6 6 H 1.48499 * 109.47211 * 149.99894 * 3 2 1 7 7 C 1.37870 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00509 * 180.02562 * 7 2 1 9 9 C 1.50710 * 120.00090 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.38299 * 119.97944 * 264.97926 * 10 9 7 12 12 C 1.38223 * 120.12144 * 180.02562 * 11 10 9 13 13 C 1.38220 * 120.09550 * 359.96048 * 12 11 10 14 14 C 1.38620 * 119.97291 * 0.06049 * 13 12 11 15 15 O 1.35948 * 120.06345 * 180.23695 * 14 13 12 16 16 C 1.42895 * 117.00499 * 359.72155 * 15 14 13 17 17 F 1.39900 * 109.47138 * 300.00446 * 16 15 14 18 18 F 1.39906 * 109.46927 * 59.99945 * 16 15 14 19 19 C 1.38282 * 119.98584 * 84.99790 * 10 9 7 20 20 F 1.35098 * 120.04923 * 359.97438 * 19 10 9 21 21 H 0.96996 * 120.00573 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46560 * 59.99944 * 9 7 2 23 23 H 1.08995 * 109.46796 * 300.00244 * 9 7 2 24 24 H 1.07994 * 119.94334 * 0.02562 * 11 10 9 25 25 H 1.07999 * 119.95091 * 179.97438 * 12 11 10 26 26 H 1.08008 * 120.01460 * 180.02562 * 13 12 11 27 27 H 1.08996 * 109.47574 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.5999 -4.2380 -1.1939 12 6 3.4975 -5.2891 -1.1973 13 6 4.0295 -5.7500 -0.0077 14 6 3.6616 -5.1584 1.1907 15 8 4.1874 -5.6072 2.3614 16 6 5.1091 -6.6964 2.2834 17 9 4.4758 -7.8028 1.7071 18 9 6.2049 -6.3245 1.4972 19 6 2.7589 -4.1020 1.1926 20 9 2.3984 -3.5225 2.3585 21 1 -0.4851 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.1863 -3.8795 -2.1249 25 1 3.7837 -5.7507 -2.1307 26 1 4.7311 -6.5711 -0.0119 27 1 5.4514 -6.9552 3.2853 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396076516.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:14 Heat of formation + Delta-G solvation = -193.871029 kcal Electronic energy + Delta-G solvation = -17598.341890 eV Core-core repulsion = 14098.439463 eV Total energy + Delta-G solvation = -3499.902428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.31582 -49.75668 -48.30378 -40.83664 -38.72134 -35.43260 -33.01230 -31.18119 -29.07235 -27.08703 -25.45502 -23.55660 -22.55048 -19.82852 -19.24266 -18.91883 -18.59188 -18.08795 -17.48290 -16.74288 -16.70875 -16.22781 -15.68827 -15.35424 -14.81530 -14.70168 -14.60742 -14.47820 -14.26543 -14.01350 -13.48982 -13.30471 -13.05768 -12.76425 -12.61004 -12.41883 -12.29400 -11.59832 -11.53994 -10.63443 -9.64980 -9.42633 -8.24092 -6.37259 0.16090 0.20358 1.38547 1.40367 1.51419 1.53157 2.36728 2.50426 2.60246 3.07776 3.24145 3.48292 3.69124 3.81749 3.95470 4.18552 4.29372 4.38207 4.86659 5.04993 5.15708 5.26470 5.31395 5.46653 5.68073 5.69727 5.99260 6.11058 6.72816 7.31094 8.86197 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.006047 C = 0.005868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.472674 B = 4628.978896 C = 4770.146521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.532 4.532 8 H 0.052 0.948 9 C 0.058 3.942 10 C -0.066 4.066 11 C -0.124 4.124 12 C -0.076 4.076 13 C -0.183 4.183 14 C 0.067 3.933 15 O -0.333 6.333 16 C 0.408 3.592 17 F -0.205 7.205 18 F -0.206 7.206 19 C 0.046 3.954 20 F -0.148 7.148 21 H 0.267 0.733 22 H 0.024 0.976 23 H 0.001 0.999 24 H 0.144 0.856 25 H 0.174 0.826 26 H 0.159 0.841 27 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.132 -14.652 1.299 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.021 3.979 10 C -0.067 4.067 11 C -0.143 4.143 12 C -0.093 4.093 13 C -0.201 4.201 14 C 0.023 3.977 15 O -0.251 6.251 16 C 0.319 3.681 17 F -0.187 7.187 18 F -0.188 7.188 19 C 0.026 3.974 20 F -0.127 7.127 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.019 0.981 24 H 0.162 0.838 25 H 0.192 0.808 26 H 0.176 0.824 27 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 10.946 -14.479 1.502 18.213 hybrid contribution -0.047 1.013 0.210 1.036 sum 10.898 -13.465 1.713 17.408 Atomic orbital electron populations 1.70065 1.07612 1.28134 1.50860 1.25899 0.95809 1.03084 0.94304 0.85417 0.78418 0.78239 0.78831 1.19021 1.20395 1.19441 1.21273 0.92947 0.91069 1.51656 0.92931 1.18050 0.92665 0.90415 0.96727 1.20480 0.97828 0.96458 0.91956 1.21185 0.99314 0.96830 0.96925 1.21371 0.94302 0.94818 0.98845 1.21552 1.04519 1.03268 0.90792 1.18860 0.96609 0.95673 0.86519 1.86638 1.58575 1.50097 1.29794 1.24305 0.74706 0.73940 0.95158 1.93074 1.82900 1.54807 1.87898 1.93077 1.55438 1.91297 1.78993 1.17154 1.01707 0.96274 0.82249 1.91409 1.90845 1.83908 1.46512 0.92386 0.95764 0.98118 0.83774 0.80836 0.82356 0.74644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.35 13.29 21.45 0.28 -56.07 15 2 C 0.01 0.44 5.46 84.65 0.46 0.91 15 3 Si 0.97 44.94 29.54 68.60 2.03 46.96 15 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 15 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 7 C -0.53 -31.08 9.09 25.60 0.23 -30.85 15 8 H 0.05 3.04 7.74 -2.91 -0.02 3.02 15 9 C 0.06 3.20 4.88 29.10 0.14 3.34 15 10 C -0.07 -3.02 5.07 -19.84 -0.10 -3.12 15 11 C -0.12 -4.49 9.68 22.28 0.22 -4.27 15 12 C -0.08 -2.14 10.04 22.26 0.22 -1.92 15 13 C -0.18 -5.42 8.26 22.36 0.18 -5.23 15 14 C 0.07 2.42 6.49 22.53 0.15 2.56 15 15 O -0.33 -10.09 10.30 -92.97 -0.96 -11.05 15 16 C 0.41 7.66 5.98 113.37 0.68 8.34 15 17 F -0.20 -4.23 15.60 44.97 0.70 -3.53 15 18 F -0.21 -4.41 15.57 44.97 0.70 -3.71 15 19 C 0.05 2.03 7.25 22.45 0.16 2.20 15 20 F -0.15 -7.28 16.41 44.97 0.74 -6.54 15 21 H 0.27 15.16 8.31 -92.71 -0.77 14.39 15 22 H 0.02 1.35 8.05 -2.39 -0.02 1.33 15 23 H 0.00 0.03 7.79 -2.39 -0.02 0.01 15 24 H 0.14 4.78 8.06 -2.91 -0.02 4.75 15 25 H 0.17 3.31 8.06 -2.91 -0.02 3.29 15 26 H 0.16 3.84 5.10 -2.91 -0.01 3.83 15 27 H 0.24 1.59 8.14 -2.39 -0.02 1.57 15 Total: -1.00 -71.26 255.45 7.05 -64.21 By element: Atomic # 1 Polarization: -3.44 SS G_CDS: 1.21 Total: -2.23 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 2.35 Total: -28.04 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.28 Total: -56.07 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.96 Total: -11.05 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 2.14 Total: -13.78 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -71.26 7.05 -64.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076516.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.663 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds