Wall clock time and date at job start Mon Mar 30 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38170 * 119.98439 * 99.72518 * 10 9 7 12 12 C 1.38689 * 119.96653 * 179.77085 * 11 10 9 13 13 O 1.35946 * 120.02785 * 180.24872 * 12 11 10 14 14 C 1.42907 * 116.99972 * 180.24966 * 13 12 11 15 15 F 1.39902 * 109.46813 * 300.00410 * 14 13 12 16 16 F 1.39900 * 109.46790 * 60.00214 * 14 13 12 17 17 C 1.38722 * 119.93990 * 0.50412 * 12 11 10 18 18 C 1.38128 * 119.97289 * 359.74399 * 17 12 11 19 19 C 1.38429 * 119.98392 * 279.99755 * 10 9 7 20 20 F 1.35101 * 119.97076 * 0.02562 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07998 * 120.01787 * 359.97438 * 11 10 9 25 25 H 1.08997 * 109.47155 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.01728 * 179.72677 * 17 12 11 27 27 H 1.08002 * 119.99132 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5253 -4.3009 1.1801 12 6 3.4229 -5.3581 1.1789 13 8 3.7103 -6.0079 2.3379 14 6 4.6479 -7.0838 2.2632 15 9 4.1630 -8.0652 1.3921 16 9 5.8728 -6.6027 1.7883 17 6 4.0313 -5.7484 -0.0051 18 6 3.7384 -5.0873 -1.1821 19 6 2.8380 -4.0352 -1.1803 20 9 2.5531 -3.3888 -2.3319 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.0546 -3.9929 2.1021 25 1 4.7862 -7.5147 3.2548 26 1 4.7339 -6.5687 -0.0068 27 1 4.2122 -5.3907 -2.1040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396083011.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:07 Heat of formation + Delta-G solvation = -175.583675 kcal Electronic energy + Delta-G solvation = -17434.608652 eV Core-core repulsion = 13935.499223 eV Total energy + Delta-G solvation = -3499.109428 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.39868 -48.04997 -47.39203 -39.62862 -37.12284 -33.46991 -31.41284 -29.69766 -27.16930 -25.96806 -23.55201 -22.30953 -20.99429 -18.48780 -18.19950 -17.95410 -16.84747 -16.41819 -15.78940 -15.38029 -14.85175 -14.51639 -14.40748 -13.88119 -13.77022 -13.67935 -13.42617 -13.30610 -12.48677 -12.27389 -12.13783 -11.97169 -11.34393 -11.12049 -10.87042 -10.60394 -10.47664 -9.70656 -9.54630 -8.45390 -8.36918 -7.73950 -6.07019 -4.11127 1.60460 1.67288 2.62092 3.32557 3.36077 3.39570 3.41120 3.98910 4.23148 4.43838 4.58777 4.87521 5.01635 5.21494 5.28336 5.53862 5.72576 5.95569 6.28698 6.44746 6.60098 6.73814 6.97963 7.38234 7.50230 7.59790 7.87132 8.22966 8.91624 9.52578 11.03227 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.005893 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.273711 B = 4750.134280 C = 4999.120268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.514 4.514 8 H 0.057 0.943 9 C 0.050 3.950 10 C -0.036 4.036 11 C -0.112 4.112 12 C 0.086 3.914 13 O -0.319 6.319 14 C 0.411 3.589 15 F -0.202 7.202 16 F -0.201 7.201 17 C -0.189 4.189 18 C -0.124 4.124 19 C 0.076 3.924 20 F -0.132 7.132 21 H 0.264 0.736 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.140 0.860 25 H 0.178 0.822 26 H 0.132 0.868 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.179 -13.965 3.890 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.013 3.987 10 C -0.037 4.037 11 C -0.130 4.130 12 C 0.043 3.957 13 O -0.237 6.237 14 C 0.320 3.680 15 F -0.184 7.184 16 F -0.183 7.183 17 C -0.207 4.207 18 C -0.143 4.143 19 C 0.057 3.943 20 F -0.110 7.110 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.157 0.843 25 H 0.194 0.806 26 H 0.149 0.851 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.951 -13.791 3.989 16.411 hybrid contribution 0.681 0.831 -0.456 1.167 sum 8.632 -12.960 3.534 15.968 Atomic orbital electron populations 1.69939 1.06033 1.27081 1.50068 1.24972 0.94905 0.99263 0.94923 0.86557 0.79538 0.82591 0.78800 1.20077 1.21150 1.20088 1.20929 0.92960 0.89603 1.51702 0.92486 1.18356 0.92281 0.88827 0.99207 1.20662 0.96946 0.96133 0.89987 1.20261 0.99013 0.94551 0.99181 1.18834 0.98250 0.94735 0.83872 1.86603 1.59355 1.45348 1.32433 1.23305 0.74112 0.78225 0.92338 1.93086 1.87918 1.63370 1.73992 1.93091 1.45847 1.88521 1.90815 1.21058 1.04187 1.03604 0.91881 1.20809 0.98717 0.96050 0.98719 1.17558 0.99631 0.94357 0.82768 1.91486 1.92327 1.80439 1.46787 0.92668 0.94537 0.94370 0.84258 0.80589 0.85058 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.35 13.29 55.43 0.74 -25.61 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 15 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -14.50 9.09 -34.44 -0.31 -14.82 15 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 15 9 C 0.05 1.29 4.82 -29.03 -0.14 1.15 15 10 C -0.04 -0.80 5.08 -104.57 -0.53 -1.33 15 11 C -0.11 -2.15 9.61 -39.44 -0.38 -2.53 15 12 C 0.09 1.46 6.48 -39.24 -0.25 1.21 15 13 O -0.32 -4.53 10.43 -19.57 -0.20 -4.73 15 14 C 0.41 4.19 5.98 101.05 0.60 4.79 15 15 F -0.20 -2.32 15.58 2.25 0.04 -2.29 15 16 F -0.20 -2.39 15.58 2.25 0.04 -2.35 15 17 C -0.19 -3.08 8.25 -39.44 -0.33 -3.41 15 18 C -0.12 -2.14 10.02 -39.53 -0.40 -2.54 15 19 C 0.08 1.59 7.23 -39.42 -0.29 1.30 15 20 F -0.13 -2.94 16.65 2.25 0.04 -2.90 15 21 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 22 H 0.04 0.96 8.01 -51.93 -0.42 0.54 15 23 H 0.04 1.05 7.94 -51.93 -0.41 0.64 15 24 H 0.14 2.55 8.04 -52.49 -0.42 2.13 15 25 H 0.18 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.13 1.88 5.10 -52.49 -0.27 1.62 15 27 H 0.13 1.90 8.06 -52.49 -0.42 1.48 15 LS Contribution 255.75 15.07 3.85 3.85 Total: -1.00 -31.02 255.75 -4.55 -35.57 By element: Atomic # 1 Polarization: -1.78 SS G_CDS: -1.90 Total: -3.68 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -2.12 Total: -14.52 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.61 kcal Atomic # 8 Polarization: -4.53 SS G_CDS: -0.20 Total: -4.73 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 0.11 Total: -7.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -31.02 -4.55 -35.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083011.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.015 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds