Wall clock time and date at job start Mon Mar 30 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38170 * 119.98439 * 99.72518 * 10 9 7 12 12 C 1.38689 * 119.96653 * 179.77085 * 11 10 9 13 13 O 1.35946 * 120.02785 * 180.24872 * 12 11 10 14 14 C 1.42907 * 116.99972 * 180.24966 * 13 12 11 15 15 F 1.39902 * 109.46813 * 300.00410 * 14 13 12 16 16 F 1.39900 * 109.46790 * 60.00214 * 14 13 12 17 17 C 1.38722 * 119.93990 * 0.50412 * 12 11 10 18 18 C 1.38128 * 119.97289 * 359.74399 * 17 12 11 19 19 C 1.38429 * 119.98392 * 279.99755 * 10 9 7 20 20 F 1.35101 * 119.97076 * 0.02562 * 19 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07998 * 120.01787 * 359.97438 * 11 10 9 25 25 H 1.08997 * 109.47155 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.01728 * 179.72677 * 17 12 11 27 27 H 1.08002 * 119.99132 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5253 -4.3009 1.1801 12 6 3.4229 -5.3581 1.1789 13 8 3.7103 -6.0079 2.3379 14 6 4.6479 -7.0838 2.2632 15 9 4.1630 -8.0652 1.3921 16 9 5.8728 -6.6027 1.7883 17 6 4.0313 -5.7484 -0.0051 18 6 3.7384 -5.0873 -1.1821 19 6 2.8380 -4.0352 -1.1803 20 9 2.5531 -3.3888 -2.3319 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.0546 -3.9929 2.1021 25 1 4.7862 -7.5147 3.2548 26 1 4.7339 -6.5687 -0.0068 27 1 4.2122 -5.3907 -2.1040 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396083011.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:07 Heat of formation + Delta-G solvation = -194.493203 kcal Electronic energy + Delta-G solvation = -17435.428630 eV Core-core repulsion = 13935.499223 eV Total energy + Delta-G solvation = -3499.929407 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.26147 -49.70479 -48.25663 -40.94335 -38.47319 -35.46724 -33.21122 -31.12355 -29.03496 -26.93608 -25.45141 -23.78464 -22.45872 -19.62600 -19.32300 -18.83989 -18.57958 -18.33580 -17.19441 -16.70439 -16.48088 -16.36113 -15.50543 -15.15673 -14.87960 -14.71349 -14.59200 -14.50329 -14.43235 -14.15066 -13.62671 -13.32328 -12.92074 -12.86719 -12.51163 -12.46889 -12.24926 -11.61150 -11.49835 -10.63257 -9.93624 -9.23973 -8.23776 -6.36826 0.13742 0.18948 1.38878 1.42146 1.50136 1.62992 2.36307 2.55017 2.58363 3.08190 3.39760 3.52654 3.74847 3.75879 3.79739 4.10817 4.25732 4.45118 4.83892 5.02268 5.03800 5.14236 5.24646 5.51150 5.65209 5.68326 6.00268 6.11046 6.72755 7.31317 8.86353 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.034252 B = 0.005893 C = 0.005600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.273711 B = 4750.134280 C = 4999.120268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.059 3.941 10 C -0.063 4.063 11 C -0.122 4.122 12 C 0.100 3.900 13 O -0.325 6.325 14 C 0.405 3.595 15 F -0.208 7.208 16 F -0.209 7.209 17 C -0.178 4.178 18 C -0.108 4.108 19 C 0.047 3.953 20 F -0.149 7.149 21 H 0.267 0.733 22 H 0.019 0.981 23 H 0.006 0.994 24 H 0.140 0.860 25 H 0.240 0.760 26 H 0.159 0.841 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.373 -15.195 4.683 18.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.570 4.570 8 H 0.071 0.929 9 C 0.022 3.978 10 C -0.064 4.064 11 C -0.141 4.141 12 C 0.056 3.944 13 O -0.243 6.243 14 C 0.316 3.684 15 F -0.190 7.190 16 F -0.191 7.191 17 C -0.197 4.197 18 C -0.126 4.126 19 C 0.028 3.972 20 F -0.128 7.128 21 H 0.076 0.924 22 H 0.037 0.963 23 H 0.024 0.976 24 H 0.158 0.842 25 H 0.255 0.745 26 H 0.177 0.823 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.155 -15.044 4.791 18.772 hybrid contribution 0.046 1.050 -0.638 1.229 sum 10.201 -13.994 4.152 17.808 Atomic orbital electron populations 1.70058 1.07612 1.28192 1.50796 1.25894 0.95809 1.03068 0.94300 0.85485 0.78355 0.77985 0.79175 1.19600 1.20263 1.18906 1.21242 0.92956 0.91054 1.51741 0.92888 1.18043 0.92665 0.90355 0.96738 1.20337 0.97784 0.96301 0.91967 1.20204 1.00068 0.95560 0.98250 1.18770 0.96687 0.93665 0.85255 1.86625 1.60388 1.46282 1.30961 1.24361 0.72580 0.76800 0.94659 1.93076 1.87960 1.63355 1.74592 1.93077 1.46264 1.88629 1.91130 1.21411 1.03660 1.03532 0.91060 1.21111 0.96908 0.94093 1.00528 1.17831 1.01448 0.96067 0.81863 1.91431 1.92734 1.81114 1.47529 0.92385 0.96268 0.97559 0.84171 0.74470 0.82320 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.03 15 2 C 0.01 0.46 5.46 84.66 0.46 0.92 15 3 Si 0.97 44.88 29.54 68.60 2.03 46.90 15 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 6 H -0.26 -11.73 7.11 99.48 0.71 -11.02 15 7 C -0.53 -31.05 9.09 25.60 0.23 -30.82 15 8 H 0.05 3.05 7.74 -2.91 -0.02 3.03 15 9 C 0.06 3.22 4.82 29.10 0.14 3.36 15 10 C -0.06 -2.86 5.08 -19.83 -0.10 -2.96 15 11 C -0.12 -4.74 9.61 22.36 0.21 -4.52 15 12 C 0.10 3.21 6.48 22.49 0.15 3.35 15 13 O -0.32 -8.20 10.43 -92.94 -0.97 -9.16 15 14 C 0.40 6.51 5.98 113.37 0.68 7.19 15 15 F -0.21 -3.96 15.58 44.97 0.70 -3.26 15 16 F -0.21 -4.13 15.58 44.97 0.70 -3.43 15 17 C -0.18 -5.30 8.25 22.36 0.18 -5.11 15 18 C -0.11 -3.51 10.02 22.30 0.22 -3.28 15 19 C 0.05 1.98 7.23 22.37 0.16 2.14 15 20 F -0.15 -6.87 16.65 44.97 0.75 -6.12 15 21 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 22 H 0.02 1.07 8.01 -2.39 -0.02 1.05 15 23 H 0.01 0.37 7.94 -2.39 -0.02 0.35 15 24 H 0.14 5.25 8.04 -2.91 -0.02 5.22 15 25 H 0.24 0.89 8.14 -2.39 -0.02 0.87 15 26 H 0.16 3.87 5.10 -2.91 -0.01 3.86 15 27 H 0.17 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -69.21 255.75 7.04 -62.17 By element: Atomic # 1 Polarization: -2.55 SS G_CDS: 1.21 Total: -1.34 kcal Atomic # 6 Polarization: -32.07 SS G_CDS: 2.34 Total: -29.73 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.03 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.97 Total: -9.16 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 2.15 Total: -12.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.21 7.04 -62.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083011.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.325 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds