Wall clock time and date at job start Mon Mar 30 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38177 * 120.00066 * 264.72443 * 10 9 7 12 12 C 1.38207 * 120.07522 * 179.69806 * 11 10 9 13 13 C 1.38518 * 120.08968 * 0.60054 * 12 11 10 14 14 F 1.35100 * 119.99753 * 179.69967 * 13 12 11 15 15 C 1.38340 * 120.00043 * 359.67571 * 13 12 11 16 16 C 1.38711 * 119.92000 * 0.02577 * 15 13 12 17 17 O 1.35902 * 120.03932 * 179.97438 * 16 15 13 18 18 C 1.42898 * 117.00259 * 0.02562 * 17 16 15 19 19 F 1.39898 * 109.47127 * 300.00119 * 18 17 16 20 20 F 1.39898 * 109.47151 * 60.00229 * 18 17 16 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07997 * 119.96125 * 359.97438 * 11 10 9 25 25 H 1.08004 * 119.95799 * 180.27515 * 12 11 10 26 26 H 1.08001 * 120.03863 * 180.02562 * 15 13 12 27 27 H 1.09001 * 109.47296 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5955 -4.2413 -1.1910 12 6 3.4982 -5.2878 -1.1934 13 6 4.0295 -5.7494 -0.0003 14 9 4.9072 -6.7765 -0.0043 15 6 3.6618 -5.1583 1.1952 16 6 2.7606 -4.1039 1.1973 17 8 2.3973 -3.5218 2.3703 18 6 2.9830 -4.0462 3.5636 19 9 2.6452 -5.3975 3.6941 20 9 4.3744 -3.9178 3.4954 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.1786 -3.8865 -2.1220 25 1 3.7858 -5.7499 -2.1263 26 1 4.0760 -5.5174 2.1257 27 1 2.6086 -3.4936 4.4254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396083047.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:33 Heat of formation + Delta-G solvation = -175.509818 kcal Electronic energy + Delta-G solvation = -17757.223815 eV Core-core repulsion = 14258.117589 eV Total energy + Delta-G solvation = -3499.106226 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.16803 -48.56528 -47.15164 -39.57726 -36.90680 -33.42379 -31.14201 -30.08231 -27.00211 -25.80736 -23.36398 -22.34979 -20.90538 -18.79927 -17.98070 -17.71137 -16.53878 -16.36199 -15.74261 -15.31132 -15.23666 -14.69322 -14.21217 -14.04812 -13.64855 -13.46875 -13.42183 -13.20553 -12.50111 -12.31863 -12.15937 -11.58168 -11.34487 -11.05984 -10.90202 -10.62304 -10.48191 -9.69847 -9.48832 -8.44187 -8.44053 -7.71758 -6.06105 -4.09483 1.59495 1.65984 2.91918 3.29125 3.35591 3.39984 3.64530 4.01141 4.43758 4.45130 4.64025 4.84773 5.09300 5.27203 5.30311 5.36759 5.78762 5.96187 6.32756 6.49382 6.54679 6.81796 7.01454 7.45734 7.52330 7.68639 7.88869 8.27069 8.94081 9.53806 11.03795 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.008088 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.421810 B = 3461.121862 C = 4128.726555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.508 4.508 8 H 0.056 0.944 9 C 0.055 3.945 10 C -0.057 4.057 11 C -0.069 4.069 12 C -0.176 4.176 13 C 0.100 3.900 14 F -0.146 7.146 15 C -0.229 4.229 16 C 0.128 3.872 17 O -0.290 6.290 18 C 0.405 3.595 19 F -0.205 7.205 20 F -0.202 7.202 21 H 0.262 0.738 22 H 0.037 0.963 23 H 0.032 0.968 24 H 0.140 0.860 25 H 0.130 0.870 26 H 0.136 0.864 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -8.796 4.160 10.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.018 3.982 10 C -0.057 4.057 11 C -0.087 4.087 12 C -0.195 4.195 13 C 0.081 3.919 14 F -0.125 7.125 15 C -0.249 4.249 16 C 0.084 3.916 17 O -0.206 6.206 18 C 0.314 3.686 19 F -0.187 7.187 20 F -0.184 7.184 21 H 0.072 0.928 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.158 0.842 25 H 0.148 0.852 26 H 0.154 0.846 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.805 -8.590 4.201 10.701 hybrid contribution 0.929 0.484 0.164 1.060 sum 5.734 -8.106 4.365 10.846 Atomic orbital electron populations 1.69950 1.05992 1.26817 1.50506 1.24965 0.94855 0.99137 0.95170 0.86551 0.79856 0.83194 0.78197 1.20582 1.21157 1.19834 1.20994 0.92934 0.89715 1.51007 0.92584 1.18267 0.92195 0.88828 0.98865 1.20250 0.99027 0.97724 0.88737 1.20834 0.95910 0.93908 0.98021 1.21043 1.01309 1.00540 0.96582 1.17163 0.92567 0.88173 0.94024 1.91442 1.66923 1.56713 1.97433 1.21301 1.04018 1.00700 0.98850 1.18413 0.95239 0.92335 0.85596 1.86849 1.64711 1.56656 1.12422 1.23452 0.75376 0.78383 0.91348 1.93067 1.91864 1.37722 1.96083 1.93075 1.33094 1.95519 1.96749 0.92833 0.94495 0.94953 0.84219 0.85169 0.84589 0.80445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 15 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.02 15 7 C -0.51 -13.90 9.09 -34.44 -0.31 -14.22 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 15 9 C 0.06 1.38 4.83 -29.03 -0.14 1.24 15 10 C -0.06 -1.21 5.08 -104.46 -0.53 -1.74 15 11 C -0.07 -1.25 9.67 -39.62 -0.38 -1.64 15 12 C -0.18 -2.90 10.02 -39.49 -0.40 -3.29 15 13 C 0.10 1.75 7.30 -39.44 -0.29 1.46 15 14 F -0.15 -2.46 17.27 2.25 0.04 -2.42 15 15 C -0.23 -4.19 8.23 -39.37 -0.32 -4.51 15 16 C 0.13 2.56 6.45 -39.23 -0.25 2.31 15 17 O -0.29 -5.55 9.57 -19.43 -0.19 -5.73 15 18 C 0.41 5.71 5.98 101.05 0.60 6.31 15 19 F -0.21 -2.97 15.58 2.25 0.04 -2.94 15 20 F -0.20 -3.09 15.58 2.25 0.04 -3.06 15 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 22 H 0.04 0.98 7.69 -51.93 -0.40 0.58 15 23 H 0.03 0.83 8.05 -51.93 -0.42 0.41 15 24 H 0.14 2.31 8.06 -52.49 -0.42 1.89 15 25 H 0.13 1.76 8.06 -52.48 -0.42 1.34 15 26 H 0.14 2.33 5.10 -52.49 -0.27 2.06 15 27 H 0.18 1.62 8.14 -51.93 -0.42 1.20 15 LS Contribution 255.40 15.07 3.85 3.85 Total: -1.00 -30.17 255.40 -4.53 -34.70 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: -1.89 Total: -3.03 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -2.12 Total: -12.50 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.19 Total: -5.73 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.11 Total: -8.41 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.17 -4.53 -34.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083047.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.808 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds