Wall clock time and date at job start Mon Mar 30 2020 06:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38177 * 120.00066 * 264.72443 * 10 9 7 12 12 C 1.38207 * 120.07522 * 179.69806 * 11 10 9 13 13 C 1.38518 * 120.08968 * 0.60054 * 12 11 10 14 14 F 1.35100 * 119.99753 * 179.69967 * 13 12 11 15 15 C 1.38340 * 120.00043 * 359.67571 * 13 12 11 16 16 C 1.38711 * 119.92000 * 0.02577 * 15 13 12 17 17 O 1.35902 * 120.03932 * 179.97438 * 16 15 13 18 18 C 1.42898 * 117.00259 * 0.02562 * 17 16 15 19 19 F 1.39898 * 109.47127 * 300.00119 * 18 17 16 20 20 F 1.39898 * 109.47151 * 60.00229 * 18 17 16 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07997 * 119.96125 * 359.97438 * 11 10 9 25 25 H 1.08004 * 119.95799 * 180.27515 * 12 11 10 26 26 H 1.08001 * 120.03863 * 180.02562 * 15 13 12 27 27 H 1.09001 * 109.47296 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.5955 -4.2413 -1.1910 12 6 3.4982 -5.2878 -1.1934 13 6 4.0295 -5.7494 -0.0003 14 9 4.9072 -6.7765 -0.0043 15 6 3.6618 -5.1583 1.1952 16 6 2.7606 -4.1039 1.1973 17 8 2.3973 -3.5218 2.3703 18 6 2.9830 -4.0462 3.5636 19 9 2.6452 -5.3975 3.6941 20 9 4.3744 -3.9178 3.4954 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.1786 -3.8865 -2.1220 25 1 3.7858 -5.7499 -2.1263 26 1 4.0760 -5.5174 2.1257 27 1 2.6086 -3.4936 4.4254 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396083047.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:33 Heat of formation + Delta-G solvation = -193.050524 kcal Electronic energy + Delta-G solvation = -17757.984437 eV Core-core repulsion = 14258.117589 eV Total energy + Delta-G solvation = -3499.866848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.32709 -49.93580 -48.30971 -41.01580 -38.31878 -35.39886 -32.92227 -31.49436 -28.79684 -27.05751 -25.22922 -23.72981 -22.49132 -20.13073 -19.23600 -18.91028 -18.45561 -17.81563 -17.16154 -16.80536 -16.68265 -16.33330 -15.63019 -15.48048 -14.95194 -14.81840 -14.66052 -14.60160 -14.26864 -13.89507 -13.43328 -13.27537 -13.17113 -12.63159 -12.55400 -12.42572 -12.07757 -11.56003 -11.50040 -10.55859 -9.87957 -9.25815 -8.15820 -6.27453 0.14163 0.21785 1.42887 1.43167 1.54446 1.71199 2.40428 2.49968 2.60241 3.14512 3.15858 3.55182 3.70053 3.70815 3.91352 4.00244 4.29324 4.54939 4.88549 4.94929 5.10500 5.28151 5.39341 5.56246 5.77649 5.80612 6.06078 6.22223 6.82936 7.39979 8.93488 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.022280 B = 0.008088 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.421810 B = 3461.121862 C = 4128.726555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.050 0.950 9 C 0.068 3.932 10 C -0.092 4.092 11 C -0.065 4.065 12 C -0.163 4.163 13 C 0.103 3.897 14 F -0.139 7.139 15 C -0.233 4.233 16 C 0.119 3.881 17 O -0.319 6.319 18 C 0.402 3.598 19 F -0.208 7.208 20 F -0.209 7.209 21 H 0.265 0.735 22 H 0.008 0.992 23 H 0.015 0.985 24 H 0.153 0.847 25 H 0.168 0.832 26 H 0.146 0.854 27 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -9.100 4.043 11.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.188 4.188 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.559 4.559 8 H 0.068 0.932 9 C 0.031 3.969 10 C -0.093 4.093 11 C -0.083 4.083 12 C -0.181 4.181 13 C 0.084 3.916 14 F -0.118 7.118 15 C -0.252 4.252 16 C 0.075 3.925 17 O -0.236 6.236 18 C 0.312 3.688 19 F -0.189 7.189 20 F -0.191 7.191 21 H 0.074 0.926 22 H 0.027 0.973 23 H 0.033 0.967 24 H 0.171 0.829 25 H 0.185 0.815 26 H 0.163 0.837 27 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.175 -8.911 4.088 11.587 hybrid contribution 0.531 0.478 0.225 0.749 sum 6.706 -8.433 4.313 11.606 Atomic orbital electron populations 1.70063 1.07476 1.27815 1.51418 1.25791 0.95660 1.02651 0.94724 0.85528 0.78561 0.78916 0.78538 1.19684 1.20571 1.19422 1.21272 0.92791 0.91133 1.50720 0.93179 1.17933 0.92429 0.90016 0.96553 1.20078 1.00213 0.98167 0.90818 1.20995 0.95860 0.93953 0.97485 1.21310 0.99732 0.99331 0.97746 1.17312 0.92173 0.87918 0.94176 1.91466 1.66588 1.56296 1.97410 1.21383 1.03736 1.00312 0.99773 1.18489 0.95470 0.92764 0.85729 1.86815 1.65671 1.57671 1.13411 1.24263 0.74917 0.78677 0.90907 1.93055 1.91824 1.38137 1.95926 1.93054 1.33816 1.95544 1.96697 0.92621 0.97327 0.96681 0.82894 0.81462 0.83687 0.75412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.40 13.29 21.45 0.28 -54.11 15 2 C 0.01 0.56 5.46 84.66 0.46 1.02 15 3 Si 0.96 43.42 29.54 68.60 2.03 45.45 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -12.34 7.11 99.48 0.71 -11.64 15 6 H -0.27 -11.92 7.11 99.48 0.71 -11.22 15 7 C -0.52 -28.98 9.09 25.60 0.23 -28.75 15 8 H 0.05 2.78 7.74 -2.91 -0.02 2.75 15 9 C 0.07 3.49 4.83 29.10 0.14 3.63 15 10 C -0.09 -3.95 5.08 -19.76 -0.10 -4.05 15 11 C -0.06 -2.30 9.67 22.25 0.22 -2.09 15 12 C -0.16 -4.92 10.02 22.33 0.22 -4.70 15 13 C 0.10 3.39 7.30 22.36 0.16 3.55 15 14 F -0.14 -4.27 17.27 44.97 0.78 -3.49 15 15 C -0.23 -8.21 8.23 22.41 0.18 -8.02 15 16 C 0.12 4.78 6.45 22.50 0.15 4.92 15 17 O -0.32 -12.23 9.57 -92.45 -0.88 -13.11 15 18 C 0.40 10.82 5.98 113.37 0.68 11.49 15 19 F -0.21 -5.75 15.58 44.97 0.70 -5.05 15 20 F -0.21 -6.12 15.58 44.97 0.70 -5.42 15 21 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 22 H 0.01 0.48 7.69 -2.39 -0.02 0.46 15 23 H 0.01 0.80 8.05 -2.39 -0.02 0.78 15 24 H 0.15 4.89 8.06 -2.91 -0.02 4.86 15 25 H 0.17 3.80 8.06 -2.91 -0.02 3.78 15 26 H 0.15 4.76 5.10 -2.91 -0.01 4.75 15 27 H 0.23 3.64 8.14 -2.39 -0.02 3.62 15 Total: -1.00 -65.04 255.40 7.16 -57.88 By element: Atomic # 1 Polarization: -0.38 SS G_CDS: 1.21 Total: 0.83 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 2.34 Total: -22.98 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.28 Total: -54.11 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.88 Total: -13.11 kcal Atomic # 9 Polarization: -16.13 SS G_CDS: 2.18 Total: -13.95 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.04 7.16 -57.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083047.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.168 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds