Wall clock time and date at job start Mon Mar 30 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00165 * 2 1 4 4 H 1.48496 * 109.47277 * 269.99678 * 3 2 1 5 5 H 1.48502 * 109.47081 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46984 * 149.99550 * 3 2 1 7 7 C 1.37878 * 119.99569 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00212 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99633 * 180.02562 * 7 2 1 10 10 C 1.50700 * 109.46721 * 180.02562 * 9 7 2 11 11 C 1.38273 * 119.94785 * 90.00511 * 10 9 7 12 12 C 1.38256 * 120.12124 * 179.97438 * 11 10 9 13 13 C 1.38330 * 120.03354 * 0.02562 * 12 11 10 14 14 F 1.35095 * 120.04926 * 179.97438 * 13 12 11 15 15 C 1.38914 * 119.90381 * 359.97438 * 13 12 11 16 16 O 1.35950 * 120.06109 * 179.97438 * 15 13 12 17 17 C 1.42903 * 117.00036 * 179.97438 * 16 15 13 18 18 F 1.39904 * 109.46926 * 59.99512 * 17 16 15 19 19 F 1.39901 * 109.46899 * 300.00056 * 17 16 15 20 20 C 1.38179 * 119.95868 * 270.25291 * 10 9 7 21 21 H 0.97005 * 119.99669 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.46972 * 60.00712 * 9 7 2 23 23 H 1.08999 * 109.47283 * 300.00184 * 9 7 2 24 24 H 1.07996 * 119.93901 * 359.97092 * 11 10 9 25 25 H 1.08003 * 119.98406 * 179.97438 * 12 11 10 26 26 H 1.09002 * 109.47382 * 179.97438 * 17 16 15 27 27 H 1.08004 * 120.00988 * 0.02562 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0137 -2.6150 0.0010 11 6 4.2443 -3.2655 -1.1972 12 6 4.7056 -4.5688 -1.2015 13 6 4.9369 -5.2253 -0.0061 14 9 5.3872 -6.4990 -0.0099 15 6 4.7057 -4.5730 1.1984 16 8 4.9315 -5.2153 2.3751 17 6 4.6725 -4.4826 3.5743 18 9 3.3268 -4.1012 3.6063 19 9 5.4814 -3.3416 3.6075 20 6 4.2382 -3.2676 1.1981 21 1 -0.4850 0.8401 -0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8752 -0.6805 -0.8888 24 1 4.0637 -2.7546 -2.1313 25 1 4.8845 -5.0750 -2.1386 26 1 4.8927 -5.1098 4.4381 27 1 4.0534 -2.7597 2.1332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396083124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:16 Heat of formation + Delta-G solvation = -191.951556 kcal Electronic energy + Delta-G solvation = -17672.171211 eV Core-core repulsion = 14172.352018 eV Total energy + Delta-G solvation = -3499.819193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.33074 -49.86664 -48.33968 -40.91467 -38.76206 -35.30650 -33.16918 -31.50300 -29.34503 -27.12487 -24.99154 -23.80319 -22.38994 -19.78346 -19.38259 -19.00729 -18.91264 -18.14603 -17.51106 -16.80238 -16.64190 -16.23567 -15.44216 -15.36008 -15.00118 -14.85451 -14.63965 -14.59685 -14.45112 -14.10979 -13.70755 -13.46846 -13.29950 -12.84681 -12.39525 -12.19330 -11.89605 -11.81043 -11.58005 -10.79594 -9.86500 -9.30959 -8.30748 -6.37112 0.12808 0.15653 1.37551 1.39875 1.49312 1.51142 2.35050 2.52205 2.54906 3.03639 3.12098 3.44765 3.64774 3.72461 3.85834 4.16534 4.26297 4.39855 4.79238 4.92530 5.04427 5.07013 5.17931 5.36851 5.53103 5.74195 5.95156 6.22820 6.68921 7.26555 8.85686 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.023674 B = 0.007749 C = 0.006548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.445425 B = 3612.431419 C = 4275.230702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.259 1.259 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.523 4.523 8 H 0.029 0.971 9 C 0.020 3.980 10 C -0.031 4.031 11 C -0.119 4.119 12 C -0.105 4.105 13 C 0.051 3.949 14 F -0.136 7.136 15 C 0.065 3.935 16 O -0.324 6.324 17 C 0.403 3.597 18 F -0.213 7.213 19 F -0.209 7.209 20 C -0.178 4.178 21 H 0.268 0.732 22 H 0.030 0.970 23 H 0.046 0.954 24 H 0.152 0.848 25 H 0.177 0.823 26 H 0.245 0.755 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.026 -8.528 3.931 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.184 1.184 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.561 4.561 8 H 0.047 0.953 9 C -0.018 4.018 10 C -0.032 4.032 11 C -0.137 4.137 12 C -0.123 4.123 13 C 0.031 3.969 14 F -0.115 7.115 15 C 0.021 3.979 16 O -0.242 6.242 17 C 0.315 3.685 18 F -0.195 7.195 19 F -0.191 7.191 20 C -0.197 4.197 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.169 0.831 25 H 0.194 0.806 26 H 0.260 0.740 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.947 -8.623 3.973 16.055 hybrid contribution -0.445 0.851 0.257 0.994 sum 12.502 -7.772 4.229 15.316 Atomic orbital electron populations 1.70057 1.08362 1.28362 1.51940 1.25962 0.95577 1.03361 0.93777 0.85667 0.79429 0.78037 0.79638 1.18389 1.21043 1.17014 1.21093 0.90507 0.93162 1.51369 0.95308 1.18707 0.94518 0.90184 0.98353 1.20140 0.92798 0.97503 0.92713 1.21175 0.99611 0.94370 0.98537 1.21276 0.99317 0.94785 0.96953 1.16989 1.07323 0.80661 0.91896 1.91455 1.87256 1.35537 1.97262 1.18880 1.01636 0.92230 0.85133 1.86594 1.82907 1.42043 1.12653 1.24435 0.72166 0.81525 0.90417 1.93111 1.37403 1.92479 1.96529 1.93073 1.73572 1.55911 1.96529 1.21312 1.04497 0.93393 1.00465 0.92275 0.95182 0.93574 0.83069 0.80554 0.73952 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 13.96 21.45 0.30 -58.53 15 2 C 0.01 0.61 5.47 84.65 0.46 1.08 15 3 Si 0.95 42.89 27.47 68.60 1.88 44.77 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 15 5 H -0.28 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.25 -10.35 6.54 99.48 0.65 -9.70 15 7 C -0.52 -29.89 9.65 25.60 0.25 -29.65 15 8 H 0.03 1.85 7.98 -2.91 -0.02 1.83 15 9 C 0.02 0.90 4.17 29.10 0.12 1.02 15 10 C -0.03 -1.28 5.07 -19.87 -0.10 -1.38 15 11 C -0.12 -4.07 9.69 22.28 0.22 -3.85 15 12 C -0.11 -3.09 10.02 22.30 0.22 -2.87 15 13 C 0.05 1.67 7.31 22.45 0.16 1.83 15 14 F -0.14 -4.25 17.11 44.97 0.77 -3.48 15 15 C 0.07 2.29 6.49 22.53 0.15 2.44 15 16 O -0.32 -9.66 10.30 -92.99 -0.96 -10.62 15 17 C 0.40 9.47 5.98 113.37 0.68 10.15 15 18 F -0.21 -6.61 15.56 44.97 0.70 -5.91 15 19 F -0.21 -5.70 15.60 44.97 0.70 -5.00 15 20 C -0.18 -6.99 7.91 22.36 0.18 -6.82 15 21 H 0.27 15.48 8.31 -92.70 -0.77 14.71 15 22 H 0.03 1.38 7.14 -2.39 -0.02 1.36 15 23 H 0.05 1.97 7.51 -2.39 -0.02 1.95 15 24 H 0.15 4.61 8.06 -2.91 -0.02 4.59 15 25 H 0.18 3.77 8.06 -2.91 -0.02 3.75 15 26 H 0.25 2.33 8.14 -2.39 -0.02 2.31 15 27 H 0.13 5.28 5.10 -2.91 -0.01 5.26 15 Total: -1.00 -69.97 252.82 6.89 -63.09 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: 1.15 Total: 3.71 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 2.33 Total: -28.04 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.30 Total: -58.53 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.96 Total: -10.62 kcal Atomic # 9 Polarization: -16.56 SS G_CDS: 2.17 Total: -14.39 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.88 Total: 44.77 kcal Total: -69.97 6.89 -63.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.864 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds