Wall clock time and date at job start Mon Mar 30 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38258 * 119.95736 * 264.72470 * 10 9 7 12 12 C 1.38136 * 120.07805 * 179.76478 * 11 10 9 13 13 C 1.38774 * 119.99401 * 0.53480 * 12 11 10 14 14 O 1.35898 * 120.04074 * 179.69923 * 13 12 11 15 15 C 1.42902 * 117.00164 * 0.02562 * 14 13 12 16 16 F 1.39898 * 109.47132 * 300.00654 * 15 14 13 17 17 F 1.39908 * 109.46893 * 59.99966 * 15 14 13 18 18 C 1.38663 * 119.91585 * 359.72059 * 13 12 11 19 19 C 1.38396 * 119.92070 * 359.97438 * 18 13 12 20 20 F 1.35101 * 119.99526 * 180.02562 * 19 18 13 21 21 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 23 23 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 24 24 H 1.07996 * 119.95767 * 0.02562 * 11 10 9 25 25 H 1.07995 * 119.99880 * 180.24906 * 12 11 10 26 26 H 1.08992 * 109.47123 * 180.02562 * 15 14 13 27 27 H 1.08004 * 120.04059 * 180.02562 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0137 -2.6150 -0.0010 11 6 4.3481 -3.2289 1.1918 12 6 4.8041 -4.5329 1.1953 13 6 4.9376 -5.2243 -0.0005 14 8 5.3919 -6.5051 0.0013 15 6 5.7130 -7.0778 1.2705 16 9 6.7182 -6.3215 1.8825 17 9 4.5733 -7.0821 2.0819 18 6 4.6071 -4.6066 -1.1972 19 6 4.1446 -3.3022 -1.1960 20 9 3.8217 -2.6990 -2.3610 21 1 -0.4850 0.8401 0.0004 22 1 3.8745 -0.6801 -0.8911 23 1 3.8751 -0.6805 0.8889 24 1 4.2486 -2.6898 2.1223 25 1 5.0611 -5.0125 2.1281 26 1 6.0630 -8.1004 1.1296 27 1 4.7098 -5.1430 -2.1289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396083776.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:17 Heat of formation + Delta-G solvation = -170.932775 kcal Electronic energy + Delta-G solvation = -17437.285759 eV Core-core repulsion = 13938.378009 eV Total energy + Delta-G solvation = -3498.907750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.43469 -48.26762 -47.42722 -39.71043 -37.28637 -33.30262 -31.33747 -30.27332 -27.75066 -25.88534 -23.05030 -22.58770 -20.72591 -19.05006 -18.23407 -17.99618 -16.84714 -16.52252 -15.86611 -15.18297 -15.07947 -14.68849 -14.45587 -14.04846 -13.91645 -13.71108 -13.53377 -13.40286 -12.81355 -12.47536 -12.27175 -11.76295 -11.71073 -11.17170 -10.95844 -10.50151 -10.15760 -10.01919 -9.41901 -8.59870 -8.54065 -7.77390 -6.08986 -4.08840 1.51223 1.61500 2.49191 3.28878 3.35388 3.36040 3.37856 3.93201 4.17549 4.40223 4.53166 4.83446 5.01592 5.16319 5.25412 5.39772 5.56324 5.73435 6.29252 6.36811 6.52087 6.69942 6.77504 6.94427 7.27219 7.34289 7.64327 8.45193 8.94487 9.50408 11.03901 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.037682 B = 0.005872 C = 0.005610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.877432 B = 4767.075478 C = 4989.962246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.083 4.083 11 C -0.060 4.060 12 C -0.198 4.198 13 C 0.102 3.898 14 O -0.322 6.322 15 C 0.413 3.587 16 F -0.200 7.200 17 F -0.198 7.198 18 C -0.173 4.173 19 C 0.131 3.869 20 F -0.126 7.126 21 H 0.265 0.735 22 H 0.029 0.971 23 H 0.034 0.966 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.179 0.821 27 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.953 -12.913 2.177 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.084 4.084 11 C -0.078 4.078 12 C -0.217 4.217 13 C 0.060 3.940 14 O -0.240 6.240 15 C 0.322 3.678 16 F -0.182 7.182 17 F -0.180 7.180 18 C -0.192 4.192 19 C 0.111 3.889 20 F -0.105 7.105 21 H 0.075 0.925 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.154 0.846 25 H 0.149 0.851 26 H 0.195 0.805 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.798 -12.867 2.009 18.259 hybrid contribution 0.180 0.994 0.093 1.014 sum 12.978 -11.873 2.102 17.715 Atomic orbital electron populations 1.69897 1.06252 1.27039 1.50400 1.24969 0.94749 0.99008 0.94327 0.86804 0.80358 0.83615 0.78754 1.20043 1.21168 1.18900 1.20873 0.87930 0.94800 1.51680 0.90819 1.18748 0.97789 0.87467 0.97967 1.20412 0.97293 0.99719 0.90971 1.20756 0.95793 0.93275 0.97982 1.21453 1.06857 0.96938 0.96468 1.18241 0.98974 0.82600 0.94234 1.86541 1.80221 1.27397 1.29824 1.23289 0.74673 0.94352 0.75452 1.93093 1.61462 1.79714 1.83953 1.93113 1.53145 1.97171 1.74574 1.20091 1.07470 0.94367 0.97296 1.17112 0.99370 0.90368 0.82022 1.91505 1.90078 1.83063 1.45816 0.92528 0.95314 0.94806 0.84582 0.85066 0.80496 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.96 55.43 0.77 -26.85 15 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 15 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.26 -6.13 6.54 56.52 0.37 -5.76 15 7 C -0.52 -14.74 9.65 -34.44 -0.33 -15.08 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.02 0.42 3.94 -29.03 -0.11 0.30 15 10 C -0.08 -1.76 5.08 -104.53 -0.53 -2.29 15 11 C -0.06 -1.10 9.67 -39.61 -0.38 -1.49 15 12 C -0.20 -3.26 8.26 -39.42 -0.33 -3.59 15 13 C 0.10 1.65 6.48 -39.23 -0.25 1.39 15 14 O -0.32 -4.21 10.43 -19.42 -0.20 -4.42 15 15 C 0.41 3.98 5.98 101.05 0.60 4.59 15 16 F -0.20 -2.23 15.58 2.25 0.04 -2.20 15 17 F -0.20 -2.34 15.58 2.25 0.04 -2.31 15 18 C -0.17 -2.96 9.97 -39.37 -0.39 -3.35 15 19 C 0.13 2.63 7.24 -39.44 -0.29 2.35 15 20 F -0.13 -2.69 16.56 2.25 0.04 -2.66 15 21 H 0.26 7.60 8.31 -40.82 -0.34 7.26 15 22 H 0.03 0.69 7.22 -51.93 -0.37 0.32 15 23 H 0.03 0.78 7.11 -51.93 -0.37 0.41 15 24 H 0.14 2.30 8.06 -52.49 -0.42 1.87 15 25 H 0.13 1.92 5.10 -52.49 -0.27 1.65 15 26 H 0.18 0.72 8.14 -51.93 -0.42 0.29 15 27 H 0.14 2.03 8.06 -52.48 -0.42 1.61 15 LS Contribution 252.03 15.07 3.80 3.80 Total: -1.00 -32.04 252.03 -4.17 -36.21 By element: Atomic # 1 Polarization: -1.32 SS G_CDS: -1.87 Total: -3.18 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.11 Total: -15.18 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.77 Total: -26.85 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.20 Total: -4.42 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.04 -4.17 -36.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396083776.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.725 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds