Wall clock time and date at job start Mon Mar 30 2020 06:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47544 * 270.00296 * 3 2 1 5 5 H 1.48498 * 109.47197 * 30.00141 * 3 2 1 6 6 H 1.48498 * 109.47103 * 150.00286 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99451 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.38385 * 120.04066 * 89.99966 * 10 9 7 12 12 F 1.35099 * 119.99635 * 359.75085 * 11 10 9 13 13 C 1.38477 * 120.00693 * 179.72585 * 11 10 9 14 14 C 1.38251 * 120.08025 * 359.97438 * 13 11 10 15 15 C 1.38130 * 120.08559 * 0.02562 * 14 13 11 16 16 C 1.38669 * 120.03790 * 269.72632 * 10 9 7 17 17 O 1.35901 * 120.04597 * 0.25181 * 16 10 9 18 18 C 1.42900 * 117.00076 * 179.97438 * 17 16 10 19 19 F 1.39907 * 109.46842 * 300.00022 * 18 17 16 20 20 F 1.39895 * 109.47477 * 59.99721 * 18 17 16 21 21 H 0.96999 * 119.99936 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47279 * 60.00245 * 9 7 2 23 23 H 1.08996 * 109.47451 * 299.99716 * 9 7 2 24 24 H 1.07990 * 119.95541 * 179.97438 * 13 11 10 25 25 H 1.08003 * 119.95329 * 180.02562 * 14 13 11 26 26 H 1.08000 * 120.00031 * 179.97438 * 15 14 13 27 27 H 1.08991 * 109.47268 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2444 -3.2683 -1.1989 12 9 4.0142 -2.6341 -2.3694 13 6 4.7115 -4.5719 -1.1980 14 6 4.9487 -5.2221 -0.0012 15 6 4.7198 -4.5733 1.1966 16 6 4.2512 -3.2671 1.1995 17 8 4.0262 -2.6277 2.3774 18 6 4.2918 -3.3610 3.5747 19 9 3.4879 -4.5055 3.6087 20 9 5.6392 -3.7366 3.6024 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6801 -0.8911 24 1 4.8907 -5.0811 -2.1333 25 1 5.3133 -6.2387 -0.0029 26 1 4.9051 -5.0827 2.1307 27 1 4.0706 -2.7363 4.4400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396085286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:03 Heat of formation + Delta-G solvation = -168.761720 kcal Electronic energy + Delta-G solvation = -17912.306745 eV Core-core repulsion = 14413.493138 eV Total energy + Delta-G solvation = -3498.813606 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.21608 -48.28076 -47.19985 -39.62790 -36.91606 -33.53354 -31.53624 -29.65992 -27.71915 -25.91099 -23.28584 -22.12990 -20.76289 -18.79219 -17.97963 -17.76701 -16.81981 -16.42045 -15.92199 -15.33170 -15.04178 -14.56739 -14.26189 -14.15782 -13.67518 -13.48728 -13.39605 -13.09805 -12.62514 -12.27991 -12.23143 -11.82143 -11.46951 -11.18417 -11.13012 -10.48631 -10.20087 -10.02028 -9.40127 -8.55978 -8.17625 -7.94036 -6.05422 -4.04110 1.51347 1.65109 2.81571 3.30922 3.37711 3.40958 3.58171 3.93082 4.43591 4.45105 4.77707 4.79882 5.07331 5.18238 5.26163 5.35377 5.66674 5.73796 6.24809 6.33884 6.57000 6.58209 6.89974 7.04524 7.24892 7.43190 7.67911 8.48745 8.97441 9.54213 11.07613 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.009580 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.340698 B = 2922.185112 C = 3781.231100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.022 3.978 10 C -0.082 4.082 11 C 0.127 3.873 12 F -0.128 7.128 13 C -0.180 4.180 14 C -0.080 4.080 15 C -0.204 4.204 16 C 0.129 3.871 17 O -0.297 6.297 18 C 0.409 3.591 19 F -0.200 7.200 20 F -0.205 7.205 21 H 0.264 0.736 22 H 0.038 0.962 23 H 0.029 0.971 24 H 0.132 0.868 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 -8.026 5.266 14.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.090 0.910 9 C -0.015 4.015 10 C -0.084 4.084 11 C 0.108 3.892 12 F -0.107 7.107 13 C -0.199 4.199 14 C -0.098 4.098 15 C -0.223 4.223 16 C 0.085 3.915 17 O -0.213 6.213 18 C 0.318 3.682 19 F -0.182 7.182 20 F -0.187 7.187 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.047 0.953 24 H 0.150 0.850 25 H 0.148 0.852 26 H 0.150 0.850 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.814 -7.723 5.254 14.289 hybrid contribution 0.310 0.617 -0.113 0.700 sum 11.124 -7.105 5.141 14.165 Atomic orbital electron populations 1.69896 1.06205 1.26937 1.50765 1.24937 0.94723 0.98910 0.94435 0.86826 0.80443 0.83687 0.78733 1.20067 1.21175 1.18882 1.20817 0.87792 0.94710 1.51240 0.90960 1.18643 0.97855 0.86985 0.98045 1.19621 0.99905 1.00289 0.88569 1.17166 1.00240 0.90809 0.81030 1.91493 1.92109 1.82078 1.44980 1.21008 1.05583 0.93840 0.99513 1.20526 0.99095 0.99387 0.90811 1.21446 1.06596 0.94141 1.00094 1.18294 0.97555 0.90947 0.84680 1.86772 1.82012 1.40492 1.12050 1.23419 0.72601 0.81035 0.91161 1.93085 1.73725 1.54719 1.96693 1.93064 1.36394 1.92506 1.96756 0.92605 0.94378 0.95334 0.85045 0.85210 0.85043 0.80427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.86 13.96 55.43 0.77 -27.09 15 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 15 3 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 15 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 15 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 15 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 15 7 C -0.51 -14.79 9.65 -34.44 -0.33 -15.12 15 8 H 0.07 2.31 7.98 -52.49 -0.42 1.89 15 9 C 0.02 0.54 3.77 -29.03 -0.11 0.43 15 10 C -0.08 -1.81 5.09 -104.41 -0.53 -2.34 15 11 C 0.13 2.56 7.24 -39.44 -0.29 2.27 15 12 F -0.13 -2.72 16.48 2.25 0.04 -2.68 15 13 C -0.18 -2.92 10.02 -39.49 -0.40 -3.32 15 14 C -0.08 -1.19 10.04 -39.62 -0.40 -1.58 15 15 C -0.20 -3.37 8.26 -39.42 -0.33 -3.70 15 16 C 0.13 2.53 6.45 -39.22 -0.25 2.27 15 17 O -0.30 -5.49 9.47 -19.43 -0.18 -5.68 15 18 C 0.41 5.39 5.98 101.05 0.60 6.00 15 19 F -0.20 -2.89 15.59 2.25 0.04 -2.86 15 20 F -0.21 -2.70 15.58 2.25 0.04 -2.67 15 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 15 22 H 0.04 0.94 6.58 -51.93 -0.34 0.60 15 23 H 0.03 0.71 7.07 -51.93 -0.37 0.34 15 24 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.13 1.45 8.06 -52.48 -0.42 1.02 15 26 H 0.13 1.94 5.10 -52.49 -0.27 1.67 15 27 H 0.18 1.48 8.14 -51.93 -0.42 1.06 15 LS Contribution 250.56 15.07 3.78 3.78 Total: -1.00 -32.65 250.56 -4.15 -36.80 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -1.83 Total: -3.60 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.12 Total: -13.08 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.09 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.18 Total: -5.68 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.11 Total: -8.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -32.65 -4.15 -36.80 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.957 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds