Wall clock time and date at job start Mon Mar 30 2020 06:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99894 * 2 1 4 4 H 1.48501 * 109.47544 * 270.00296 * 3 2 1 5 5 H 1.48498 * 109.47197 * 30.00141 * 3 2 1 6 6 H 1.48498 * 109.47103 * 150.00286 * 3 2 1 7 7 C 1.37884 * 119.99815 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50698 * 119.99451 * 179.97438 * 7 2 1 10 10 C 1.50702 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.38385 * 120.04066 * 89.99966 * 10 9 7 12 12 F 1.35099 * 119.99635 * 359.75085 * 11 10 9 13 13 C 1.38477 * 120.00693 * 179.72585 * 11 10 9 14 14 C 1.38251 * 120.08025 * 359.97438 * 13 11 10 15 15 C 1.38130 * 120.08559 * 0.02562 * 14 13 11 16 16 C 1.38669 * 120.03790 * 269.72632 * 10 9 7 17 17 O 1.35901 * 120.04597 * 0.25181 * 16 10 9 18 18 C 1.42900 * 117.00076 * 179.97438 * 17 16 10 19 19 F 1.39907 * 109.46842 * 300.00022 * 18 17 16 20 20 F 1.39895 * 109.47477 * 59.99721 * 18 17 16 21 21 H 0.96999 * 119.99936 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47279 * 60.00245 * 9 7 2 23 23 H 1.08996 * 109.47451 * 299.99716 * 9 7 2 24 24 H 1.07990 * 119.95541 * 179.97438 * 13 11 10 25 25 H 1.08003 * 119.95329 * 180.02562 * 14 13 11 26 26 H 1.08000 * 120.00031 * 179.97438 * 15 14 13 27 27 H 1.08991 * 109.47268 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0140 -2.6148 -0.0010 11 6 4.2444 -3.2683 -1.1989 12 9 4.0142 -2.6341 -2.3694 13 6 4.7115 -4.5719 -1.1980 14 6 4.9487 -5.2221 -0.0012 15 6 4.7198 -4.5733 1.1966 16 6 4.2512 -3.2671 1.1995 17 8 4.0262 -2.6277 2.3774 18 6 4.2918 -3.3610 3.5747 19 9 3.4879 -4.5055 3.6087 20 9 5.6392 -3.7366 3.6024 21 1 -0.4850 0.8400 0.0004 22 1 3.8752 -0.6804 0.8889 23 1 3.8745 -0.6801 -0.8911 24 1 4.8907 -5.0811 -2.1333 25 1 5.3133 -6.2387 -0.0029 26 1 4.9051 -5.0827 2.1307 27 1 4.0706 -2.7363 4.4400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396085286.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:02 Heat of formation + Delta-G solvation = -190.148146 kcal Electronic energy + Delta-G solvation = -17913.234130 eV Core-core repulsion = 14413.493138 eV Total energy + Delta-G solvation = -3499.740991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.28344 -49.85006 -48.26642 -40.99168 -38.24931 -35.51954 -33.43737 -31.00057 -29.52522 -27.04963 -25.12346 -23.45743 -22.41287 -20.07553 -19.16439 -19.07795 -18.81884 -17.74145 -17.37868 -16.76940 -16.61124 -16.12603 -15.85578 -15.46971 -14.97686 -14.84065 -14.67241 -14.59804 -14.20917 -13.87890 -13.62595 -13.42527 -13.16754 -12.65426 -12.59573 -12.23198 -12.03404 -11.80406 -11.59299 -10.80878 -9.62324 -9.39908 -8.31903 -6.36636 0.11974 0.26746 1.33991 1.35328 1.47600 1.66382 2.33497 2.51514 2.56762 3.01806 3.40770 3.52539 3.74434 3.82920 3.88280 4.02330 4.23661 4.37374 4.82527 4.91238 5.06022 5.14438 5.26857 5.40238 5.51031 5.64752 6.04763 6.21917 6.65686 7.25700 8.84864 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020354 B = 0.009580 C = 0.007403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.340698 B = 2922.185112 C = 3781.231100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.247 1.247 7 C -0.515 4.515 8 H 0.024 0.976 9 C 0.032 3.968 10 C -0.131 4.131 11 C 0.102 3.898 12 F -0.144 7.144 13 C -0.171 4.171 14 C -0.060 4.060 15 C -0.203 4.203 16 C 0.117 3.883 17 O -0.327 6.327 18 C 0.406 3.594 19 F -0.208 7.208 20 F -0.203 7.203 21 H 0.269 0.731 22 H 0.038 0.962 23 H 0.024 0.976 24 H 0.166 0.834 25 H 0.180 0.820 26 H 0.152 0.848 27 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.112 -8.917 5.950 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.186 4.186 3 Si 0.770 3.230 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.170 1.170 7 C -0.552 4.552 8 H 0.043 0.957 9 C -0.005 4.005 10 C -0.132 4.132 11 C 0.083 3.917 12 F -0.123 7.123 13 C -0.190 4.190 14 C -0.077 4.077 15 C -0.222 4.222 16 C 0.073 3.927 17 O -0.244 6.244 18 C 0.317 3.683 19 F -0.190 7.190 20 F -0.185 7.185 21 H 0.078 0.922 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.184 0.816 25 H 0.198 0.802 26 H 0.169 0.831 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 12.899 -8.634 5.946 16.622 hybrid contribution -0.341 0.715 -0.282 0.841 sum 12.559 -7.919 5.664 15.891 Atomic orbital electron populations 1.70047 1.08151 1.28299 1.52181 1.25917 0.95634 1.03202 0.93838 0.85701 0.79637 0.78314 0.79343 1.19235 1.20095 1.17018 1.21002 0.90278 0.92985 1.50975 0.95739 1.18360 0.94823 0.89794 0.97510 1.19563 1.03439 0.99482 0.90734 1.17603 1.01615 0.92466 0.80057 1.91442 1.92481 1.82677 1.45653 1.21399 1.03833 0.91984 1.01765 1.21146 0.96249 1.01023 0.89328 1.21775 1.05624 0.92897 1.01864 1.18498 0.97649 0.92033 0.84484 1.86724 1.82327 1.42340 1.13029 1.24207 0.72361 0.81223 0.90547 1.93064 1.74030 1.55327 1.96590 1.93060 1.36323 1.92516 1.96609 0.92248 0.94364 0.95807 0.81625 0.80223 0.83094 0.75520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.57 13.96 21.45 0.30 -60.27 15 2 C 0.01 0.68 5.47 84.66 0.46 1.14 15 3 Si 0.95 45.33 27.47 68.60 1.88 47.21 15 4 H -0.27 -12.39 7.11 99.48 0.71 -11.68 15 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 15 7 C -0.51 -31.27 9.65 25.60 0.25 -31.02 15 8 H 0.02 1.66 7.98 -2.91 -0.02 1.64 15 9 C 0.03 1.66 3.77 29.10 0.11 1.77 15 10 C -0.13 -5.85 5.09 -19.73 -0.10 -5.95 15 11 C 0.10 4.10 7.24 22.36 0.16 4.26 15 12 F -0.14 -6.22 16.48 44.97 0.74 -5.48 15 13 C -0.17 -5.09 10.02 22.33 0.22 -4.87 15 14 C -0.06 -1.54 10.04 22.25 0.22 -1.31 15 15 C -0.20 -6.20 8.26 22.37 0.18 -6.02 15 16 C 0.12 4.54 6.45 22.50 0.15 4.69 15 17 O -0.33 -11.95 9.47 -92.43 -0.88 -12.83 15 18 C 0.41 9.90 5.98 113.37 0.68 10.58 15 19 F -0.21 -5.64 15.59 44.97 0.70 -4.94 15 20 F -0.20 -4.84 15.58 44.97 0.70 -4.14 15 21 H 0.27 15.90 8.31 -92.71 -0.77 15.13 15 22 H 0.04 1.91 6.58 -2.39 -0.02 1.90 15 23 H 0.02 1.21 7.07 -2.39 -0.02 1.19 15 24 H 0.17 3.73 8.06 -2.92 -0.02 3.71 15 25 H 0.18 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.15 3.97 5.10 -2.91 -0.01 3.95 15 27 H 0.23 3.12 8.14 -2.39 -0.02 3.10 15 Total: -1.00 -74.63 250.56 6.94 -67.69 By element: Atomic # 1 Polarization: -1.67 SS G_CDS: 1.16 Total: -0.51 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 2.34 Total: -26.74 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.30 Total: -60.27 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.88 Total: -12.83 kcal Atomic # 9 Polarization: -16.70 SS G_CDS: 2.14 Total: -14.56 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -74.63 6.94 -67.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396085286.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.457 kcal (2) G-P(sol) polarization free energy of solvation -74.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds