Wall clock time and date at job start Mon Mar 30 2020 06:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38172 * 120.01277 * 264.72240 * 10 9 7 12 12 C 1.38432 * 120.03031 * 179.79239 * 11 10 9 13 13 F 1.35101 * 119.97184 * 180.25426 * 12 11 10 14 14 C 1.38482 * 120.05577 * 0.46314 * 12 11 10 15 15 C 1.38118 * 120.03175 * 359.78943 * 14 12 11 16 16 C 1.38676 * 120.01470 * 84.99834 * 10 9 7 17 17 O 1.35944 * 120.03666 * 359.97438 * 16 10 9 18 18 C 1.42898 * 117.00656 * 180.02562 * 17 16 10 19 19 F 1.39900 * 109.46777 * 299.99769 * 18 17 16 20 20 F 1.39895 * 109.46992 * 60.00044 * 18 17 16 21 21 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.07999 * 119.98718 * 0.02562 * 11 10 9 25 25 H 1.08005 * 119.97977 * 179.76995 * 14 12 11 26 26 H 1.08004 * 120.01647 * 179.97438 * 15 14 12 27 27 H 1.09000 * 109.47200 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0137 -2.6151 -0.0001 11 6 4.3473 -3.2303 1.1913 12 6 4.8047 -4.5369 1.1920 13 9 5.1257 -5.1389 2.3581 14 6 4.9375 -5.2258 -0.0019 15 6 4.6097 -4.6115 -1.1947 16 6 4.1467 -3.3037 -1.1964 17 8 3.8236 -2.6980 -2.3698 18 6 3.9848 -3.4674 -3.5631 19 9 5.3241 -3.8499 -3.6939 20 9 3.1784 -4.6084 -3.4947 21 1 -0.4850 0.8401 -0.0004 22 1 3.8751 -0.6798 -0.8895 23 1 3.8745 -0.6810 0.8905 24 1 4.2477 -2.6928 2.1227 25 1 5.2980 -6.2440 -0.0002 26 1 4.7137 -5.1490 -2.1257 27 1 3.6930 -2.8669 -4.4248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396086355.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:05 Heat of formation + Delta-G solvation = -190.396576 kcal Electronic energy + Delta-G solvation = -17729.763649 eV Core-core repulsion = 14230.011885 eV Total energy + Delta-G solvation = -3499.751764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.27613 -49.85992 -48.26097 -41.03556 -38.26879 -35.44397 -33.46272 -31.02631 -29.52288 -26.93095 -25.18910 -23.57757 -22.37582 -19.94619 -19.16889 -19.02045 -18.79366 -18.11359 -17.38661 -16.62133 -16.60288 -16.27975 -15.51027 -15.17397 -14.97628 -14.83065 -14.65130 -14.59724 -14.53527 -14.04955 -13.59351 -13.36396 -13.16968 -12.79621 -12.49572 -12.35067 -11.91737 -11.71717 -11.52825 -10.76330 -9.95380 -9.19113 -8.27256 -6.32178 0.10571 0.19428 1.39355 1.40967 1.52379 1.74008 2.37661 2.49672 2.56072 3.06885 3.24833 3.51146 3.71675 3.75129 3.76036 4.09702 4.21922 4.49026 4.78214 4.88778 5.03701 5.06588 5.09729 5.47265 5.56809 5.66339 6.05629 6.26849 6.71807 7.30361 8.89365 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.009306 C = 0.006919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.954844 B = 3008.078663 C = 4045.666750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.513 4.513 8 H 0.026 0.974 9 C 0.029 3.971 10 C -0.054 4.054 11 C -0.131 4.131 12 C 0.066 3.934 13 F -0.142 7.142 14 C -0.125 4.125 15 C -0.164 4.164 16 C 0.085 3.915 17 O -0.322 6.322 18 C 0.403 3.597 19 F -0.205 7.205 20 F -0.210 7.210 21 H 0.267 0.733 22 H 0.037 0.963 23 H 0.038 0.962 24 H 0.145 0.855 25 H 0.169 0.831 26 H 0.155 0.845 27 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 -7.163 -6.008 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.551 4.551 8 H 0.044 0.956 9 C -0.009 4.009 10 C -0.055 4.055 11 C -0.150 4.150 12 C 0.047 3.953 13 F -0.120 7.120 14 C -0.143 4.143 15 C -0.182 4.182 16 C 0.042 3.958 17 O -0.240 6.240 18 C 0.314 3.686 19 F -0.186 7.186 20 F -0.192 7.192 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.163 0.837 25 H 0.186 0.814 26 H 0.172 0.828 27 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 11.823 -6.936 -5.996 14.961 hybrid contribution -0.203 0.268 0.249 0.419 sum 11.620 -6.668 -5.746 14.578 Atomic orbital electron populations 1.70055 1.08305 1.28229 1.52342 1.25915 0.95548 1.03217 0.93957 0.85691 0.79551 0.78187 0.79476 1.18803 1.21004 1.16802 1.21016 0.90364 0.92952 1.50778 0.95608 1.18536 0.94606 0.89569 0.98146 1.19429 0.97715 0.98320 0.90044 1.21002 1.01027 0.94162 0.98769 1.17627 1.03880 0.91887 0.81938 1.91460 1.90798 1.83273 1.46516 1.21075 1.01887 1.01786 0.89583 1.21478 1.03188 0.93084 1.00498 1.18878 0.98918 0.92534 0.85507 1.86763 1.81977 1.41806 1.13409 1.24211 0.73095 0.80569 0.90719 1.93060 1.37369 1.92311 1.95901 1.93058 1.73872 1.55561 1.96677 0.92374 0.94505 0.94352 0.83697 0.81369 0.82793 0.75629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.97 13.96 21.45 0.30 -58.67 15 2 C 0.01 0.61 5.47 84.66 0.46 1.08 15 3 Si 0.95 43.07 27.47 68.60 1.88 44.95 15 4 H -0.26 -11.39 7.11 99.48 0.71 -10.69 15 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 6 H -0.24 -10.23 6.54 99.48 0.65 -9.58 15 7 C -0.51 -29.45 9.65 25.60 0.25 -29.21 15 8 H 0.03 1.67 7.98 -2.91 -0.02 1.64 15 9 C 0.03 1.34 3.89 29.10 0.11 1.46 15 10 C -0.05 -2.27 5.08 -19.77 -0.10 -2.37 15 11 C -0.13 -4.89 9.65 22.30 0.22 -4.68 15 12 C 0.07 2.17 7.30 22.37 0.16 2.34 15 13 F -0.14 -4.46 17.27 44.97 0.78 -3.68 15 14 C -0.12 -3.63 10.02 22.30 0.22 -3.41 15 15 C -0.16 -5.16 8.26 22.36 0.18 -4.97 15 16 C 0.09 3.23 6.45 22.49 0.15 3.37 15 17 O -0.32 -11.55 9.57 -92.92 -0.89 -12.44 15 18 C 0.40 9.88 5.98 113.37 0.68 10.56 15 19 F -0.20 -4.91 15.58 44.97 0.70 -4.21 15 20 F -0.21 -5.77 15.58 44.97 0.70 -5.07 15 21 H 0.27 15.44 8.31 -92.71 -0.77 14.67 15 22 H 0.04 1.69 7.12 -2.39 -0.02 1.67 15 23 H 0.04 1.73 7.11 -2.39 -0.02 1.71 15 24 H 0.15 5.13 8.06 -2.91 -0.02 5.11 15 25 H 0.17 3.64 8.06 -2.91 -0.02 3.61 15 26 H 0.15 4.20 5.10 -2.91 -0.01 4.18 15 27 H 0.23 3.16 8.14 -2.39 -0.02 3.15 15 Total: -1.00 -68.45 251.80 6.96 -61.49 By element: Atomic # 1 Polarization: 2.31 SS G_CDS: 1.16 Total: 3.46 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: 2.33 Total: -25.83 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.30 Total: -58.67 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.89 Total: -12.44 kcal Atomic # 9 Polarization: -15.14 SS G_CDS: 2.18 Total: -12.96 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Total: -68.45 6.96 -61.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396086355.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.909 kcal (2) G-P(sol) polarization free energy of solvation -68.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds