Wall clock time and date at job start Mon Mar 30 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38226 * 120.01049 * 264.99468 * 10 9 7 12 12 C 1.38221 * 120.09209 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.12628 * 0.02562 * 12 11 10 14 14 C 1.38298 * 120.03104 * 0.04315 * 13 12 11 15 15 F 1.35101 * 120.04735 * 179.97438 * 14 13 12 16 16 C 1.38610 * 120.01660 * 84.72835 * 10 9 7 17 17 O 1.35960 * 120.06440 * 359.97438 * 16 10 9 18 18 C 1.42899 * 117.00115 * 90.00073 * 17 16 10 19 19 F 1.39899 * 109.47207 * 300.00244 * 18 17 16 20 20 F 1.39902 * 109.47069 * 60.00051 * 18 17 16 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07998 * 119.95456 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.93620 * 180.02562 * 12 11 10 26 26 H 1.08001 * 119.98721 * 180.02562 * 13 12 11 27 27 H 1.09000 * 109.47097 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6002 -4.2327 -1.2053 12 6 3.4987 -5.2830 -1.2119 13 6 4.0300 -5.7494 -0.0234 14 6 3.6623 -5.1659 1.1753 15 9 4.1807 -5.6216 2.3367 16 6 2.7645 -4.1054 1.1828 17 8 2.4064 -3.5245 2.3587 18 6 1.2716 -4.0713 3.0334 19 9 0.1464 -3.9734 2.2078 20 9 1.5122 -5.4157 3.3362 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1873 -3.8704 -2.1352 25 1 3.7863 -5.7403 -2.1471 26 1 4.7321 -6.5700 -0.0312 27 1 1.0948 -3.5168 3.9550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396088789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:35 Heat of formation + Delta-G solvation = -175.365303 kcal Electronic energy + Delta-G solvation = -18152.263853 eV Core-core repulsion = 14653.163894 eV Total energy + Delta-G solvation = -3499.099959 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.73377 -48.47820 -46.79250 -39.29358 -36.84548 -33.45444 -31.23851 -29.62199 -27.25225 -25.43492 -23.51582 -22.01153 -20.79916 -18.51860 -17.78052 -17.41340 -16.65107 -16.29168 -16.01345 -15.47038 -15.09944 -14.54878 -14.15705 -13.72158 -13.36396 -13.22967 -13.00219 -12.74570 -12.32211 -12.02023 -11.94164 -11.53715 -11.41131 -11.07419 -10.84233 -10.49194 -10.39715 -9.65111 -9.48655 -8.42856 -8.28100 -8.08502 -6.05564 -4.08594 1.34164 1.66282 3.31843 3.35050 3.35842 3.39757 3.98165 4.07529 4.44509 4.55908 4.91837 5.05196 5.18452 5.29575 5.40637 5.60867 5.75152 5.94673 6.37285 6.51409 6.64394 6.81113 6.99388 7.47832 7.60108 7.68302 7.89276 8.26245 8.94145 9.53795 11.04521 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.008929 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.509018 B = 3134.994027 C = 3649.749271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.039 3.961 10 C -0.004 4.004 11 C -0.130 4.130 12 C -0.086 4.086 13 C -0.179 4.179 14 C 0.095 3.905 15 F -0.137 7.137 16 C 0.026 3.974 17 O -0.307 6.307 18 C 0.402 3.598 19 F -0.193 7.193 20 F -0.212 7.212 21 H 0.263 0.737 22 H 0.052 0.948 23 H 0.032 0.968 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.132 0.868 27 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.829 -9.635 2.288 10.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.002 3.998 10 C -0.005 4.005 11 C -0.148 4.148 12 C -0.104 4.104 13 C -0.198 4.198 14 C 0.075 3.925 15 F -0.115 7.115 16 C -0.018 4.018 17 O -0.226 6.226 18 C 0.313 3.687 19 F -0.175 7.175 20 F -0.194 7.194 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.051 0.949 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.150 0.850 27 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.747 -9.410 2.417 10.413 hybrid contribution 0.442 0.624 0.140 0.777 sum 4.189 -8.786 2.557 10.064 Atomic orbital electron populations 1.69951 1.05965 1.26930 1.50333 1.24961 0.94882 0.99127 0.95172 0.86585 0.79526 0.82738 0.78772 1.20182 1.21219 1.20119 1.20900 0.92888 0.89467 1.51258 0.92574 1.18603 0.92482 0.88727 0.99948 1.21015 0.94562 0.94595 0.90329 1.21139 0.98945 0.96511 0.98227 1.21029 0.95942 0.96278 0.97137 1.20826 1.04701 1.03262 0.90971 1.18051 0.97547 0.94773 0.82094 1.91459 1.85097 1.88012 1.46980 1.18432 1.00854 0.96358 0.86144 1.86751 1.45712 1.56220 1.33896 1.23557 0.76187 0.77931 0.91042 1.93077 1.53556 1.95587 1.75234 1.93051 1.94012 1.38960 1.93426 0.92767 0.92958 0.94939 0.84869 0.85292 0.85032 0.81367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.51 -14.08 9.09 -34.44 -0.31 -14.39 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.04 0.99 4.72 -29.03 -0.14 0.85 15 10 C 0.00 -0.10 4.93 -104.49 -0.51 -0.61 15 11 C -0.13 -2.37 9.68 -39.59 -0.38 -2.75 15 12 C -0.09 -1.29 10.04 -39.57 -0.40 -1.69 15 13 C -0.18 -2.80 10.02 -39.54 -0.40 -3.20 15 14 C 0.10 1.77 7.02 -39.30 -0.28 1.50 15 15 F -0.14 -2.52 16.75 2.25 0.04 -2.48 15 16 C 0.03 0.54 5.32 -39.18 -0.21 0.33 15 17 O -0.31 -6.40 9.53 -19.61 -0.19 -6.58 15 18 C 0.40 6.94 6.32 101.05 0.64 7.58 15 19 F -0.19 -3.79 14.46 2.25 0.03 -3.76 15 20 F -0.21 -3.64 16.61 2.25 0.04 -3.61 15 21 H 0.26 7.24 8.31 -40.82 -0.34 6.91 15 22 H 0.05 1.39 5.06 -51.93 -0.26 1.13 15 23 H 0.03 0.86 8.05 -51.93 -0.42 0.44 15 24 H 0.13 2.25 8.06 -52.49 -0.42 1.82 15 25 H 0.13 1.46 8.06 -52.49 -0.42 1.04 15 26 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.17 2.10 8.14 -51.93 -0.42 1.68 15 LS Contribution 255.56 15.07 3.85 3.85 Total: -1.00 -30.90 255.56 -4.51 -35.41 By element: Atomic # 1 Polarization: -1.27 SS G_CDS: -1.91 Total: -3.18 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -2.08 Total: -10.79 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.74 Total: -25.27 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.19 Total: -6.58 kcal Atomic # 9 Polarization: -9.96 SS G_CDS: 0.11 Total: -9.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.90 -4.51 -35.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396088789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.959 kcal (2) G-P(sol) polarization free energy of solvation -30.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds