Wall clock time and date at job start Mon Mar 30 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38226 * 120.01049 * 264.99468 * 10 9 7 12 12 C 1.38221 * 120.09209 * 179.97438 * 11 10 9 13 13 C 1.38296 * 120.12628 * 0.02562 * 12 11 10 14 14 C 1.38298 * 120.03104 * 0.04315 * 13 12 11 15 15 F 1.35101 * 120.04735 * 179.97438 * 14 13 12 16 16 C 1.38610 * 120.01660 * 84.72835 * 10 9 7 17 17 O 1.35960 * 120.06440 * 359.97438 * 16 10 9 18 18 C 1.42899 * 117.00115 * 90.00073 * 17 16 10 19 19 F 1.39899 * 109.47207 * 300.00244 * 18 17 16 20 20 F 1.39902 * 109.47069 * 60.00051 * 18 17 16 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.07998 * 119.95456 * 0.02562 * 11 10 9 25 25 H 1.07998 * 119.93620 * 180.02562 * 12 11 10 26 26 H 1.08001 * 119.98721 * 180.02562 * 13 12 11 27 27 H 1.09000 * 109.47097 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6002 -4.2327 -1.2053 12 6 3.4987 -5.2830 -1.2119 13 6 4.0300 -5.7494 -0.0234 14 6 3.6623 -5.1659 1.1753 15 9 4.1807 -5.6216 2.3367 16 6 2.7645 -4.1054 1.1828 17 8 2.4064 -3.5245 2.3587 18 6 1.2716 -4.0713 3.0334 19 9 0.1464 -3.9734 2.2078 20 9 1.5122 -5.4157 3.3362 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.1873 -3.8704 -2.1352 25 1 3.7863 -5.7403 -2.1471 26 1 4.7321 -6.5700 -0.0312 27 1 1.0948 -3.5168 3.9550 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396088789.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:35 Heat of formation + Delta-G solvation = -194.043674 kcal Electronic energy + Delta-G solvation = -18153.073808 eV Core-core repulsion = 14653.163894 eV Total energy + Delta-G solvation = -3499.909914 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.14939 -49.89058 -48.22418 -40.75718 -38.28336 -35.42978 -32.99886 -31.01357 -29.05834 -26.84897 -25.38629 -23.42193 -22.39798 -19.95892 -19.19768 -18.84234 -18.48613 -17.98710 -17.46865 -16.88875 -16.52191 -16.47486 -15.49121 -15.17910 -14.82115 -14.70229 -14.51351 -14.46558 -14.13994 -13.50880 -13.33492 -13.22381 -12.99013 -12.73452 -12.58536 -12.34855 -12.10762 -11.53886 -11.34295 -10.56252 -9.69188 -9.60668 -8.18119 -6.29089 -0.04623 0.24690 1.40776 1.43002 1.51165 2.01243 2.40627 2.63062 2.69121 3.11451 3.17924 3.66780 3.71524 3.86035 4.09115 4.32286 4.37579 4.50310 5.00270 5.06081 5.15094 5.37003 5.42130 5.59089 5.75626 5.81032 6.08521 6.22321 6.80566 7.37317 8.91595 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.023613 B = 0.008929 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.509018 B = 3134.994027 C = 3649.749271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.049 0.951 9 C 0.048 3.952 10 C -0.043 4.043 11 C -0.136 4.136 12 C -0.066 4.066 13 C -0.158 4.158 14 C 0.079 3.921 15 F -0.138 7.138 16 C 0.005 3.995 17 O -0.332 6.332 18 C 0.397 3.603 19 F -0.211 7.211 20 F -0.212 7.212 21 H 0.265 0.735 22 H 0.032 0.968 23 H 0.008 0.992 24 H 0.140 0.860 25 H 0.180 0.820 26 H 0.174 0.826 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 -10.547 1.711 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.067 0.933 9 C 0.011 3.989 10 C -0.043 4.043 11 C -0.154 4.154 12 C -0.084 4.084 13 C -0.177 4.177 14 C 0.059 3.941 15 F -0.117 7.117 16 C -0.038 4.038 17 O -0.251 6.251 18 C 0.308 3.692 19 F -0.193 7.193 20 F -0.194 7.194 21 H 0.074 0.926 22 H 0.050 0.950 23 H 0.026 0.974 24 H 0.157 0.843 25 H 0.197 0.803 26 H 0.191 0.809 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.546 -10.337 1.839 11.875 hybrid contribution -0.097 0.798 0.312 0.862 sum 5.449 -9.539 2.152 11.195 Atomic orbital electron populations 1.70070 1.07456 1.27878 1.51271 1.25806 0.95711 1.02682 0.94716 0.85565 0.78361 0.78474 0.79043 1.19199 1.20493 1.19717 1.21191 0.92707 0.91032 1.50977 0.93290 1.18285 0.92853 0.90017 0.97697 1.20778 0.95933 0.95209 0.92391 1.21350 0.99587 0.97293 0.97174 1.21497 0.93527 0.94288 0.99061 1.21366 1.03726 1.02967 0.89630 1.18256 0.97737 0.94867 0.83231 1.91451 1.85021 1.87900 1.47309 1.18656 1.01891 0.97442 0.85858 1.86684 1.46846 1.57397 1.34179 1.24278 0.74781 0.78356 0.91774 1.93036 1.54449 1.95688 1.76105 1.93038 1.93927 1.39153 1.93279 0.92607 0.94973 0.97393 0.84252 0.80252 0.80895 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 15 2 C 0.01 0.52 5.46 84.66 0.46 0.98 15 3 Si 0.96 44.23 29.54 68.60 2.03 46.26 15 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 15 7 C -0.52 -29.69 9.09 25.60 0.23 -29.46 15 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 15 9 C 0.05 2.56 4.72 29.10 0.14 2.70 15 10 C -0.04 -1.87 4.93 -19.78 -0.10 -1.97 15 11 C -0.14 -4.78 9.68 22.26 0.22 -4.57 15 12 C -0.07 -1.73 10.04 22.28 0.22 -1.51 15 13 C -0.16 -4.33 10.02 22.30 0.22 -4.11 15 14 C 0.08 2.80 7.02 22.45 0.16 2.96 15 15 F -0.14 -4.86 16.75 44.97 0.75 -4.11 15 16 C 0.01 0.21 5.32 22.53 0.12 0.33 15 17 O -0.33 -14.05 9.53 -93.09 -0.89 -14.93 15 18 C 0.40 13.77 6.32 113.37 0.72 14.48 15 19 F -0.21 -8.60 14.46 44.97 0.65 -7.95 15 20 F -0.21 -7.20 16.61 44.97 0.75 -6.45 15 21 H 0.27 14.88 8.31 -92.70 -0.77 14.11 15 22 H 0.03 1.81 5.06 -2.38 -0.01 1.80 15 23 H 0.01 0.44 8.05 -2.39 -0.02 0.42 15 24 H 0.14 4.60 8.06 -2.91 -0.02 4.57 15 25 H 0.18 2.93 8.06 -2.91 -0.02 2.90 15 26 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 27 H 0.22 5.19 8.14 -2.39 -0.02 5.17 15 Total: -1.00 -68.90 255.56 7.17 -61.73 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 1.21 Total: 0.61 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 2.39 Total: -20.16 kcal Atomic # 7 Polarization: -55.29 SS G_CDS: 0.28 Total: -55.00 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.89 Total: -14.93 kcal Atomic # 9 Polarization: -20.66 SS G_CDS: 2.15 Total: -18.51 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -68.90 7.17 -61.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396088789.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.314 kcal (2) G-P(sol) polarization free energy of solvation -68.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds