Wall clock time and date at job start Mon Mar 30 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35970 * 117.00221 * 2 1 4 4 C 1.39344 * 119.87451 * 359.97438 * 3 2 1 5 5 C 1.37934 * 120.65641 * 179.97438 * 4 3 2 6 6 C 1.38786 * 120.09095 * 0.06351 * 5 4 3 7 7 O 1.35026 * 132.97399 * 179.62614 * 6 5 4 8 8 C 1.34950 * 109.84073 * 179.88715 * 7 6 5 9 9 C 1.46804 * 125.31189 * 180.16719 * 8 7 6 10 10 O 1.22011 * 119.99961 * 180.28133 * 9 8 7 11 11 C 1.41389 * 119.99855 * 0.27198 * 9 8 7 12 12 H 1.08001 * 120.00476 * 0.02562 * 11 9 8 13 13 C 1.40442 * 119.99960 * 180.02562 * 11 9 8 14 14 N 1.30483 * 119.99876 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00199 * 180.02562 * 13 11 9 16 16 H 1.48496 * 109.47227 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.47079 * 120.00264 * 15 13 11 18 18 H 1.48504 * 109.47418 * 240.00364 * 15 13 11 19 19 C 1.36645 * 109.37912 * 0.40351 * 8 7 6 20 20 C 1.40905 * 119.49159 * 359.93414 * 6 5 4 21 21 C 1.37938 * 119.88304 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47053 * 299.99209 * 1 2 3 23 23 H 1.08995 * 109.47194 * 60.00182 * 1 2 3 24 24 H 1.09011 * 109.47044 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.67588 * 0.03970 * 4 3 2 26 26 H 1.07993 * 119.95371 * 180.02562 * 5 4 3 27 27 H 0.96999 * 119.99614 * 179.97438 * 14 13 11 28 28 H 1.07991 * 126.57817 * 179.78172 * 19 8 7 29 29 H 1.08000 * 120.20217 * 359.96205 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2849 2.3785 -0.0005 5 6 1.8943 3.6159 0.0000 6 6 3.2790 3.7096 -0.0003 7 8 4.1306 4.7574 -0.0064 8 6 5.4046 4.3122 -0.0009 9 6 6.6008 5.1631 -0.0015 10 8 7.7104 4.6557 -0.0014 11 6 6.4671 6.5707 -0.0023 12 1 5.4849 7.0199 -0.0021 13 6 7.6115 7.3848 -0.0034 14 7 8.7982 6.8422 -0.0041 15 14 7.4349 9.2444 -0.0038 16 1 5.9943 9.6048 -0.0022 17 1 8.0860 9.8037 1.2081 18 1 8.0840 9.8031 -1.2170 19 6 5.4074 2.9457 -0.0001 20 6 4.0539 2.5327 0.0003 21 6 3.4240 1.2808 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0278 -0.0005 25 1 0.2068 2.3135 -0.0003 26 1 1.2932 4.5130 0.0000 27 1 9.5885 7.4045 -0.0052 28 1 6.2759 2.3040 0.0005 29 1 4.0135 0.3759 0.0016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396140084.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:39 Heat of formation + Delta-G solvation = -52.912205 kcal Electronic energy + Delta-G solvation = -16597.747218 eV Core-core repulsion = 13645.813964 eV Total energy + Delta-G solvation = -2951.933254 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.82255 -39.44218 -36.79588 -36.03738 -33.01532 -32.26070 -29.89052 -28.94059 -27.05901 -27.02440 -23.51337 -21.91125 -21.05001 -19.76016 -18.01027 -17.05599 -16.90000 -15.87006 -15.78871 -15.44280 -15.33677 -14.45175 -13.85142 -13.36158 -13.06587 -12.97881 -12.67212 -12.36171 -12.21762 -11.99402 -11.87696 -11.40632 -11.15507 -10.67524 -10.63650 -10.55475 -10.41041 -9.74127 -9.16199 -7.89277 -7.75037 -7.51841 -6.57762 -5.15219 1.09290 1.73191 2.67827 3.00847 3.05049 3.11224 3.27031 3.49849 3.88376 3.98987 4.25764 4.84571 5.01715 5.04703 5.06424 5.25735 5.35774 5.47651 5.54281 5.66220 5.78433 6.12271 6.23090 6.43260 6.45321 6.72068 6.75207 7.00315 7.11340 7.44411 7.71568 7.87836 8.52510 8.56412 10.01115 10.23294 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.055092 B = 0.004864 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.115575 B = 5754.774694 C = 6247.744658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.103 3.897 4 C -0.193 4.193 5 C -0.062 4.062 6 C 0.000 4.000 7 O -0.170 6.170 8 C 0.053 3.947 9 C 0.405 3.595 10 O -0.521 6.521 11 C -0.491 4.491 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.722 5.722 15 Si 0.916 3.084 16 H -0.257 1.257 17 H -0.270 1.270 18 H -0.270 1.270 19 C -0.219 4.219 20 C -0.075 4.075 21 C -0.121 4.121 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.095 0.905 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.280 0.720 28 H 0.155 0.845 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -5.788 0.007 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.058 3.942 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.048 4.048 7 O -0.070 6.070 8 C 0.002 3.998 9 C 0.301 3.699 10 O -0.411 6.411 11 C -0.521 4.521 12 H 0.100 0.900 13 C -0.151 4.151 14 N -0.350 5.350 15 Si 0.739 3.261 16 H -0.180 1.180 17 H -0.195 1.195 18 H -0.195 1.195 19 C -0.239 4.239 20 C -0.076 4.076 21 C -0.139 4.139 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.114 0.886 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.091 0.909 28 H 0.173 0.827 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.087 -5.971 0.005 14.384 hybrid contribution -0.456 0.792 0.001 0.914 sum -13.543 -5.178 0.006 14.499 Atomic orbital electron populations 1.22988 0.78950 1.03488 1.01179 1.86054 1.20879 1.26898 1.89614 1.18566 0.91781 0.83906 0.99927 1.20879 0.99507 0.91078 1.09751 1.19615 0.89344 0.97829 1.01299 1.19871 0.92136 0.85838 1.06975 1.84356 1.15527 1.32644 1.74467 1.25498 0.83713 0.94893 0.95667 1.17251 0.83067 0.88040 0.81524 1.90662 1.23456 1.75941 1.51034 1.21042 0.94478 0.92202 1.44383 0.89963 1.26112 0.94531 1.01765 0.92713 1.69926 0.98788 1.37807 1.28505 0.86145 0.80068 0.81107 0.78768 1.18049 1.19526 1.19520 1.21647 0.95365 0.94591 1.12281 1.18740 0.93946 0.92846 1.02067 1.19648 0.91011 0.96544 1.06740 0.92846 0.92852 0.88611 0.84922 0.85107 0.90923 0.82684 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 15 2 O -0.32 -4.32 10.49 -19.65 -0.21 -4.52 15 3 C 0.10 1.57 6.68 -39.28 -0.26 1.31 15 4 C -0.19 -2.69 9.02 -39.28 -0.35 -3.04 15 5 C -0.06 -0.99 10.05 -39.49 -0.40 -1.38 15 6 C 0.00 0.00 7.39 -38.37 -0.28 -0.28 15 7 O -0.17 -3.92 10.36 1.88 0.02 -3.90 15 8 C 0.05 1.31 6.99 -36.70 -0.26 1.06 15 9 C 0.40 11.54 6.90 -34.92 -0.24 11.30 15 10 O -0.52 -16.32 15.38 4.91 0.08 -16.25 15 11 C -0.49 -13.47 9.13 -37.55 -0.34 -13.81 15 12 H 0.08 2.12 7.68 -52.49 -0.40 1.71 15 13 C 0.07 1.93 5.50 -17.29 -0.10 1.83 15 14 N -0.72 -20.00 11.72 55.57 0.65 -19.35 15 15 Si 0.92 18.70 29.56 -169.99 -5.03 13.67 15 16 H -0.26 -5.13 7.11 56.52 0.40 -4.72 15 17 H -0.27 -5.36 7.11 56.52 0.40 -4.95 15 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 19 C -0.22 -4.95 10.62 -38.91 -0.41 -5.37 15 20 C -0.07 -1.51 6.19 -106.92 -0.66 -2.17 15 21 C -0.12 -2.09 10.05 -38.98 -0.39 -2.48 15 22 H 0.05 0.41 7.65 -51.93 -0.40 0.01 15 23 H 0.05 0.41 7.65 -51.93 -0.40 0.01 15 24 H 0.10 0.60 8.14 -51.92 -0.42 0.18 15 25 H 0.13 1.36 6.26 -52.49 -0.33 1.03 15 26 H 0.13 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.28 6.83 8.29 -40.82 -0.34 6.49 15 28 H 0.16 3.36 8.06 -52.49 -0.42 2.94 15 29 H 0.13 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 266.99 15.07 4.02 4.02 Total: -1.00 -31.95 266.99 -5.52 -37.47 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -2.35 Total: 0.65 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.71 Total: -11.79 kcal Atomic # 7 Polarization: -20.00 SS G_CDS: 0.65 Total: -19.35 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.11 Total: -24.67 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.95 -5.52 -37.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396140084.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.445 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds